PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01128.1.g00040.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 413aa    MW: 45624.7 Da    PI: 10.3106
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01128.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.1e-27174224151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krien++nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s
  Zpz_sc01128.1.g00040.1.am.mk 174 KRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 224
                                   79***********************************************96 PP
2K-box68.12.9e-23236328192
                         K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieel 80 
                                   yq++++++  e ++ ++   e++++k+e+++L+  +R++ G+dL+sL+l + + LeqqLe s++k+R++K+ell +q+++l
  Zpz_sc01128.1.g00040.1.am.mk 236 YQHTTNNHfEEINHDQQIFVEMTRMKEEVDKLEMGIRRYAGDDLSSLTLSDVKDLEQQLEFSVNKVRARKHELLSQQLDNL 316
                                   66666777777788899999************************************************************* PP

                         K-box  81 qkkekelqeenk 92 
                                   ++k +e+q++n 
  Zpz_sc01128.1.g00040.1.am.mk 317 RRKINENQQQNL 328
                                   *********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-41166225IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.282166226IPR002100Transcription factor, MADS-box
CDDcd002658.58E-42167243No hitNo description
SuperFamilySSF554551.15E-32167254IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-29168188IPR002100Transcription factor, MADS-box
PROSITE patternPS003500168222IPR002100Transcription factor, MADS-box
PfamPF003192.8E-25175222IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-29188203IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-29203224IPR002100Transcription factor, MADS-box
PfamPF014868.0E-20246327IPR002487Transcription factor, K-box
PROSITE profilePS5129712.498250343IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MILEKIKALP NFIVGKSISC SLKQAGFCRP TPPPRPCENR VRQAVPIKPG KQATQPSHRD  60
SMRSLGFLPA SVTIGGKRPR LLLLVAPAEI GKAERPGGAT RVEGMKITSY PALCTPLPAL  120
LYMSLLLPLL PQPFKQAPHK AASSRKSGGR NQFVDLPAKR RSLAAMGRGK IEIKRIENST  180
NRQVTFSKRR GGLLKKANEL AVLCDARVGV VIFSSTGKMF EYCSPTCSLK ELIEQYQHTT  240
NNHFEEINHD QQIFVEMTRM KEEVDKLEMG IRRYAGDDLS SLTLSDVKDL EQQLEFSVNK  300
VRARKHELLS QQLDNLRRKI NENQQQNLAV GRGDMKLAAE MSPLAMLPPP AVAFGHDAAA  360
YYGGESSSSS TALQLMSAAP QLHHPGGGEG FRLQPTQPNL QDLHHGHHGL QLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18166262192MEF2C
5f28_B2e-18166262192MEF2C
5f28_C2e-18166262192MEF2C
5f28_D2e-18166262192MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01128.1.g00040.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2712081e-165AJ271208.1 Zea mays mRNA for putative MADS-domain transcription factor (m17 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393162.11e-133MADS-box protein ZMM17 isoform X2
SwissprotQ8VWM81e-131M17_MAIZE; MADS-box protein ZMM17
TrEMBLA0A1D6H1J31e-131A0A1D6H1J3_MAIZE; Zea mays MADS17
TrEMBLA0A3L6ESV61e-131A0A3L6ESV6_MAIZE; MADS-box protein ZMM17
STRINGSb04g004736.11e-130(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.27e-46MIKC_MADS family protein