PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01112.1.g00180.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 413aa MW: 44630.3 Da PI: 7.1009 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.8e-30 | 182 | 238 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ kg+e prsYY+Ct +gCpvkk vers d+ ++eitY+g+Hnh+ Zpz_sc01112.1.g00180.1.sm.mk 182 KDGYSWRKYGQKQLKGAESPRSYYKCTREGCPVKKVVERSF-DGFITEITYKGRHNHP 238 8****************************************.***************8 PP | |||||||
2 | WRKY | 103.3 | 1.4e-32 | 313 | 371 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg++ prsYY+Ct +C+v+k++er+++dp++v +tY g+Hnh+ Zpz_sc01112.1.g00180.1.sm.mk 313 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADNCNVRKQIERASTDPRCVLTTYAGRHNHD 371 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-27 | 178 | 240 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-24 | 180 | 240 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.9E-33 | 181 | 239 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-24 | 182 | 238 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.984 | 183 | 240 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-33 | 298 | 373 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.59E-28 | 306 | 373 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.221 | 308 | 373 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-35 | 313 | 372 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-24 | 314 | 371 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MDDRRGRGGD AMRHRPFASA QERVFDGGGA GPSFGGDFDQ GSSYMELLSA GVNPQPPPPL 60 PQWAVEEMAA APAINLVPQS FSTANFTSSS SSYQHPASFA AVSPLSYSTQ PYAPLYLQQT 120 DLPPTQWHPR PAIMSAASSY LPPNFSFLPA AAHNNQLQQH VVHLRGGAGG QPSPAVIEQP 180 AKDGYSWRKY GQKQLKGAES PRSYYKCTRE GCPVKKVVER SFDGFITEIT YKGRHNHPRP 240 PQRGNDGDVP AGIIAEEALD GQSDHDDDED VLHEDHDGDE GHRAMGADGT VAGQRVVKKP 300 KIILQTPSDV DLLDDGYRWR KYGQKVVKGN PRPRSYYKCT ADNCNVRKQI ERASTDPRCV 360 LTTYAGRHNH DPPGQGPDAA AAPGGASAHH PAAAGGSGMF QQTGGSRQLK EES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 9e-33 | 183 | 373 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 9e-33 | 183 | 373 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01112.1.g00180.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363803 | 2e-82 | AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020402538.1 | 1e-147 | probable WRKY transcription factor 26 | ||||
TrEMBL | A0A1E5VEH5 | 1e-153 | A0A1E5VEH5_9POAL; Putative WRKY transcription factor 58 | ||||
STRING | Pavir.J00850.1.p | 1e-144 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2875 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 6e-68 | WRKY DNA-binding protein 3 |