PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc01107.1.g00180.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 632aa MW: 68296.3 Da PI: 10.8234

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc01107.1.g00180.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	456	478	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+++Fs+ L H+r+H Zpz_sc01107.1.g00180.1.am.mk 456 HKCRKCDQVFSSGPALGDHMRKH 478 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	220	400	422	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	0.014	404	422	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.7E-5	456	480	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0024	456	478	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.408	456	483	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	458	478	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence Send to blast
MAEAVMNGEK ANSHAHATLR NTSALAGRNL TLYISSLFSL SPVDRTGGCK RRENEISGQS 60 STLMNASCVI LFLRARMPAA EQLRVNARSL AAGRETQTWW DVYGLFLQQR LPCGLSGLLS 120 VLGQYLNRLP KIPPLASLVR VSGSTPSRTA SAALYMLRFS QFSQPYKLQR EQAAHPATIN 180 PNPTALSRSP HPWRPLLTVA AAAPTATLKT SRRASTSQLP HDVRVVRRQG RLAPIPCSRG 240 GDPSAAVLPA DEETTATGRA AMLPSSGVHH QRLRQQRPRF ILFLWLGRHR QARPRWDQRQ 300 GHRRLNHPLQ PKPLAFARPN LLSSFNIASV RPNFFVGESS RSPQSTSSEN KPAAAGPSDD 360 AFVHQQPAAT QPDQQLNVEL QLAPPGPPEQ AGSAAPRRKY RSEICGRSYR KHQELGGHKT 420 GHLIQRKKFE AAPAAAGFSL DSNANPAAER QSAREHKCRK CDQVFSSGPA LGDHMRKHYE 480 GVPIVVVRKS KKQCVEQPPQ PGGPSTSLAS PAAASPPTGS RPRLSGVDIC VPVEAPAVQE 540 GTDHIGPREG APEVQEGASP PAGRTLRLFG VDIWVPVEAP AVPEGSYIRP GEGAPDVQEG 600 SDIRPQVEAP AVQERTAMTE DSASIGGQLR QG

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence Send to blast

MAEAVMNGEK ANSHAHATLR NTSALAGRNL TLYISSLFSL SPVDRTGGCK RRENEISGQS  60
STLMNASCVI LFLRARMPAA EQLRVNARSL AAGRETQTWW DVYGLFLQQR LPCGLSGLLS  120
VLGQYLNRLP KIPPLASLVR VSGSTPSRTA SAALYMLRFS QFSQPYKLQR EQAAHPATIN  180
PNPTALSRSP HPWRPLLTVA AAAPTATLKT SRRASTSQLP HDVRVVRRQG RLAPIPCSRG  240
GDPSAAVLPA DEETTATGRA AMLPSSGVHH QRLRQQRPRF ILFLWLGRHR QARPRWDQRQ  300
GHRRLNHPLQ PKPLAFARPN LLSSFNIASV RPNFFVGESS RSPQSTSSEN KPAAAGPSDD  360
AFVHQQPAAT QPDQQLNVEL QLAPPGPPEQ AGSAAPRRKY RSEICGRSYR KHQELGGHKT  420
GHLIQRKKFE AAPAAAGFSL DSNANPAAER QSAREHKCRK CDQVFSSGPA LGDHMRKHYE  480
GVPIVVVRKS KKQCVEQPPQ PGGPSTSLAS PAAASPPTGS RPRLSGVDIC VPVEAPAVQE  540
GTDHIGPREG APEVQEGASP PAGRTLRLFG VDIWVPVEAP AVPEGSYIRP GEGAPDVQEG  600
SDIRPQVEAP AVQERTAMTE DSASIGGQLR QG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	475	491	RKHYEGVPIVVVRKSKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc01107.1.g00180.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18524	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	5e-11	C2H2 family protein