PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01105.1.g00140.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 694aa    MW: 73200.5 Da    PI: 10.5822
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01105.1.g00140.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR185.77e-27555657291
                          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvk 69 
                                   fYn YA++v Fs+r+s ++ s+r+g++++r+fvC keg+r+ ++k+             + k rrt+a+tr+gCka+++vk
  Zpz_sc01105.1.g00140.1.sm.mk 555 FYNVYAHRVCFSTRISVMHWSRRDGTVMSRQFVCAKEGFRTYQSKNelaradagtgdedSGKGRRTHAVTRVGCKAMIRVK 635
                                   *********************************************9***********99999******************* PP

                          FAR1  70 kekdgkwevtkleleHnHelap 91 
                                   k+++g+w vtkle+  nH+l p
  Zpz_sc01105.1.g00140.1.sm.mk 636 KQDNGRWTVTKLETAQNHPLIP 657
                                   *******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.40.3604.7E-93108IPR008962PapD-like
SuperFamilySSF493541.49E-93143IPR008962PapD-like
PROSITE profilePS5020213.0084139IPR000535Major sperm protein (MSP) domain
Gene3DG3DSA:1.25.40.206.0E-20153248IPR020683Ankyrin repeat-containing domain
PfamPF127964.1E-9154235IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.04E-47171483IPR020683Ankyrin repeat-containing domain
CDDcd002041.85E-25171307No hitNo description
PROSITE profilePS5029750.825176486IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.995176208IPR002110Ankyrin repeat
SMARTSM002480.017176205IPR002110Ankyrin repeat
PROSITE profilePS5008810.659208240IPR002110Ankyrin repeat
SMARTSM002481000208233IPR002110Ankyrin repeat
SMARTSM002480.16236267IPR002110Ankyrin repeat
PROSITE profilePS500889.11236268IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.1E-25249369IPR020683Ankyrin repeat-containing domain
CDDcd002043.54E-26281450No hitNo description
SMARTSM002481.2286317IPR002110Ankyrin repeat
PROSITE profilePS5008810.793286318IPR002110Ankyrin repeat
PfamPF127961.1E-8307368IPR020683Ankyrin repeat-containing domain
SMARTSM002482.2E-4320351IPR002110Ankyrin repeat
PROSITE profilePS5008812.476320345IPR002110Ankyrin repeat
PRINTSPR014155.0E-5321336IPR002110Ankyrin repeat
SMARTSM002481200355384IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.206.0E-21407486IPR020683Ankyrin repeat-containing domain
PfamPF138571.8E-9419470No hitNo description
CDDcd002044.66E-8424482No hitNo description
SMARTSM002485.5E-5429458IPR002110Ankyrin repeat
PROSITE profilePS5008813.17429461IPR002110Ankyrin repeat
PRINTSPR014155.0E-5445459IPR002110Ankyrin repeat
SMARTSM002481700462493IPR002110Ankyrin repeat
PfamPF031017.3E-25555657IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MDRLVIPEPS SEVMIRVEPG RQARGELTLR NAMHTMPVAF WLQPAVRGRF AVGPHTGILA  60
PLAAVTVEVV YLAATPDSPS GGGGGGGSRG EDAFLLHSVV APGAAVKEPV TALDSVNPEW  120
FSARKKQVFV DSGIRASFVG ASVAARLVVA SAVEALREML DRSDPEWRAA DAADESGRTL  180
LDLAVGLGRA DIVQLLLEYG ADADKPSRGR TPLEIAAASG ECLIAELLLA NGATPAGSDA  240
LHVAAAAGHD DMLKLLLGKL ASGSPASSSS ASSSLTFTSI DAEGRDGKTP LRLAAEAGRR  300
DAVKALLVAG ARAETRCGKD GSTALHAAAR RGDETIVRLL LSHGAAGTAT VRDTAGKTAF  360
EIAAEEGHAG RIMDFLGLGE TILAAAXXAV RRRGRRRRVR RGAGFARGRV DAVSDLIGRG  420
ADVDAADAEG YTALHCAAEA GRADVVDVLL RNGANAKATT AKGRTAAETA AAAGKSKVVR  480
LLEKAGGVGR KGVGEKVKPA VAKAGSMDRR RRSRKGSSGA IRFGGGKERF EAASVTSLRR  540
RRGHGVRREE DAWTFYNVYA HRVCFSTRIS VMHWSRRDGT VMSRQFVCAK EGFRTYQSKN  600
ELARADAGTG DEDSGKGRRT HAVTRVGCKA MIRVKKQDNG RWTVTKLETA QNHPLIPDQS  660
HCLPPHKPLS ECGKQKPFGV FGARSNHRSD ELIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y4f_A1e-311714861385Ankyrin-2
5y4f_B1e-311714861385Ankyrin-2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392399RGRRRRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01105.1.g00140.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466729.10.0tankyrase
TrEMBLC5WQH40.0C5WQH4_SORBI; Uncharacterized protein
STRINGSb01g012990.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-21FAR1-related sequence 5