PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01095.1.g00090.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 224aa    MW: 23978 Da    PI: 10.096
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01095.1.g00090.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31141201159
                                   ---SS-EEEEEEE--TT-SS-E..EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefpr..sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK vk+s fpr  sYYrCt++ C+vkk+v+r a+d++vv++tYeg Hnh+
  Zpz_sc01095.1.g00090.1.sm.mk 141 LDDGYRWRKYGQKAVKNSAFPRlkSYYRCTHHACNVKKQVQRLAKDTSVVVTTYEGVHNHP 201
                                   59*******************8889***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-31127201IPR003657WRKY domain
SuperFamilySSF1182901.2E-26133202IPR003657WRKY domain
PROSITE profilePS5081126.016136203IPR003657WRKY domain
SMARTSM007742.1E-36141202IPR003657WRKY domain
PfamPF031068.8E-24142201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEDSLRGAHQ HQLSEFLALT STGAAPRPQE KQQGSSNVAA THLAPTGAVS CSPLVDWTSL  60
LLSSAPGLPQ SQKHTAAGAC EQENAGGGEG SSTVTTATAS GGGSSSCKEM VKAGRKGGGR  120
GKKKASRPRF AFQTRSESDV LDDGYRWRKY GQKAVKNSAF PRLKSYYRCT HHACNVKKQV  180
QRLAKDTSVV VTTYEGVHNH PCEKLMEALN PILRQLQLLT QLGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24131200774Probable WRKY transcription factor 4
2lex_A2e-24131200774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01095.1.g00090.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9580741e-100EU958074.1 Zea mays clone 1671428 WRKY23 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160818.12e-73probable WRKY transcription factor 75
SwissprotQ9FFS34e-53WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A446J9339e-74A0A446J933_TRITD; Uncharacterized protein
STRINGGRMZM2G015433_P013e-72(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.15e-48WRKY DNA-binding protein 24