 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zpz_sc01089.1.g00040.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
MYB |
| Protein Properties |
Length: 472aa MW: 51922.9 Da PI: 9.4369 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc01089.1.g00040.1.am.mk | genome | ZGD | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.5 | 2.3e-16 | 158 | 205 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl
Zpz_sc01089.1.g00040.1.am.mk 158 KGPWTPEEDVILVSYIQEHGPGNWRAVPVNTGLMRCSKSCRLRWTNYL 205
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 46.7 | 7.3e-15 | 211 | 256 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T+ E+ ++v++ +lG++ W++Ia++++ Rt++++k++w+++l
Zpz_sc01089.1.g00040.1.am.mk 211 RGNFTPHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 256
89********************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 472 aa
Download sequence Send
to blast |
MAHSISYAGT TCSRRKQLAG TIYPSSILPA PSTCGCGPSR RITGANIDQH AHMSDRIDRP 60
YSQYVRNRVF METWSARSPQ ARPGWIPLQS AGHGFGVATT MSCGALEQAS GNRYPSQCRR 120
FKEGTVDRRA GPWIYRSLEK KKKKMGRPPC CDKVGIKKGP WTPEEDVILV SYIQEHGPGN 180
WRAVPVNTGL MRCSKSCRLR WTNYLRPGIR RGNFTPHEEG IIVHLQSLLG NRWAAIASYL 240
PQRTDNDIKN YWNTHLQKKL KKHQAIGAIF APPPPPSDLS SMTIPAAAFT DAGHVDHHRM 300
ITNPLSTYSY APRPTRSNPG DVTQLIARRS SFAAAPGSSL DAESGTSSSS YASSMDNISK 360
LLDGFMKSAT PQNDVAAAQL NPPAAEVNPL LPFESMSGAG REVPPSFADV LPPQPVLMEP 420
RSGHHDDQPK QQQQQAQAPL SSMEKWLLDE AAEQVGDLMD LSDPWCSVPM LF
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 7e-24 | 158 | 260 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 1e-23 | 156 | 260 | 25 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 6e-24 | 158 | 260 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 6e-24 | 158 | 260 | 4 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK357478 | 1e-146 | AK357478.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054F12. |
