PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01086.1.g00090.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 117aa    MW: 12747.4 Da    PI: 10.0395
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01086.1.g00090.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.19.2e-172963135
                          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                  C +C + kT +WR gp g+ktLCnaCG++y++ +l
  Zpz_sc01086.1.g00090.1.sm.mk 29 CPHCASEKTQQWRTGPLGPKTLCNACGVRYKSGRL 63
                                  9******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-142373IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-122761IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.1062759IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-142787No hitNo description
CDDcd002024.03E-102875No hitNo description
PfamPF003207.9E-152963IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402954IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MMNLPAAPAP GGGGDDPNSR SEDGGVRRCP HCASEKTQQW RTGPLGPKTL CNACGVRYKS  60
GRLVPEYRPA ASPTFVLTQH SNSHRKVMEL RRQKELIHHR GTSSSASSSP FRDYGLC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01086.1.g00090.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658338.12e-48GATA transcription factor 2
SwissprotO497418e-45GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A1D6K8G24e-47A0A1D6K8G2_MAIZE; GATA transcription factor
STRINGGRMZM2G113098_P016e-48(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.17e-47GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]