PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01056.1.g00170.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 179aa    MW: 19518 Da    PI: 9.7882
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01056.1.g00170.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.16e-336105199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvi 80 
                                   aCa+Ck++rrkC+++C la yfpa+++++f+++h++FG++n++kl+ka  +e  r++a+++l++eA++r rdP +G+++ +
  Zpz_sc01056.1.g00170.1.am.mk   6 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHQVFGVANLTKLIKANATEAaRRRAADTLTWEARWRERDPSEGCYREV 86 
                                   7**********************************************9977766*************************** PP

                        DUF260  81 lklqqqleqlkaelallke 99 
                                     l+++ + l+ae a+l++
  Zpz_sc01056.1.g00170.1.am.mk  87 VGLRRENAVLRAENAALRR 105
                                   ************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.7235107IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-306103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTGGGACAVC KHQRRKCEPN CELAAYFPAN RMNDFRALHQ VFGVANLTKL IKANATEAAR  60
RRAADTLTWE ARWRERDPSE GCYREVVGLR RENAVLRAEN AALRRQGAAA FSAYGGARVA  120
NSNVAGCCYN GNRAAQTMLM GYTQDDRYLC PAADVRNGAG VVRSDAAITT IRGNKNNLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-174999103LOB family transfactor Ramosa2.1
5ly0_B6e-174999103LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc01056.1.g00170.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-116HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314390.12e-63LOB domain-containing protein 7
TrEMBLI1HDS95e-62I1HDS9_BRADI; Uncharacterized protein
STRINGBRADI2G08480.18e-63(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-23LOB domain-containing protein 2