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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Zpz_sc01055.1.g00220.1.sm.mk |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 185aa MW: 21134.2 Da PI: 9.451 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc01055.1.g00220.1.sm.mk | genome | ZGD | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 100 | 9.2e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyeys+
Zpz_sc01055.1.g00220.1.sm.mk 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLYEYST 59
79***********************************************96 PP
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| 2 | K-box | 26.5 | 2.6e-10 | 63 | 113 | 37 | 99 |
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
hl+Ge+Le+L+lkeLqqLeqq ++l+le+i+elq+kek+lqeenk L+k+l
Zpz_sc01055.1.g00220.1.sm.mk 63 HLMGEELETLKLKELQQLEQQ------------SQLMLESISELQRKEKSLQEENKVLQKELV 113
9******************97............89************************9985 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 185 aa
Download sequence Send
to blast |
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLYEYSTD 60
SWHLMGEELE TLKLKELQQL EQQSQLMLES ISELQRKEKS LQEENKVLQK ELVEKQKAQK 120
QQVQWEHGQQ PQTSSSSSTF KTREAPPTVN ISTYPVAAGV RVDGAPERPE VCFGLPPWMM 180
SHLNG
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ430632 | 2e-86 | AJ430632.1 Zea mays mRNA for putative MADS-domain transcription factor (m15 gene). |
| GenBank | AJ430641 | 2e-86 | AJ430641.1 Zea mays mRNA for putative MADS-domain transcription factor (m4 gene). |
| GenBank | BT065993 | 2e-86 | BT065993.1 Zea mays full-length cDNA clone ZM_BFb0138G13 mRNA, complete cds. |
| GenBank | BT085681 | 2e-86 | BT085681.1 Zea mays full-length cDNA clone ZM_BFc0047E01 mRNA, complete cds. |
| GenBank | KJ726927 | 2e-86 | KJ726927.1 Zea mays clone pUT3472 MADS transcription factor (MADS15) mRNA, partial cds. |
| GenBank | KJ727509 | 2e-86 | KJ727509.1 Zea mays clone pUT5368 MADS transcription factor (MADS4) mRNA, partial cds. |
| Publications
? help Back to Top |
- Jia H, et al.
Characterization and transcriptional profiles of two rice MADS-box genes.
Plant Sci., 2000. 155(2): p. 115-122
[PMID:10814814] - Jang S,An K,Lee S,An G
Characterization of tobacco MADS-box genes involved in floral initiation.
Plant Cell Physiol., 2002. 43(2): p. 230-8
[PMID:11867703] - Kim SL,Lee S,Kim HJ,Nam HG,An G
OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
Plant Physiol., 2007. 145(4): p. 1484-94
[PMID:17951465] - Li D, et al.
Functional characterization of rice OsDof12.
Planta, 2009. 229(6): p. 1159-69
[PMID:19198875] - Tanaka N, et al.
The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
Plant Cell, 2011. 23(6): p. 2143-54
[PMID:21705640] - Kobayashi K, et al.
Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
Plant Cell, 2012. 24(5): p. 1848-59
[PMID:22570445] - Wei X, et al.
Fine mapping of BH1, a gene controlling lemma and palea development in rice.
Plant Cell Rep., 2013. 32(9): p. 1455-63
[PMID:23689259] - Su L,Shan JX,Gao JP,Lin HX
OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
Mol Plant, 2016. 9(2): p. 233-244
[PMID:26537047] - Wu F, et al.
The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
Plant J., 2017. 89(2): p. 310-324
[PMID:27689766]
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