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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc01003.1.g00260.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 845aa MW: 93082.7 Da PI: 8.2771 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.5 | 1.7e-42 | 18 | 184 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpk.............................. 49 lppGfrFhPtdeelv +yL++k+ +++ + vi++vd++k P+ L Zpz_sc01003.1.g00260.1.am.mk 18 LPPGFRFHPTDEELVIQYLARKALNSRYTS-PVIADVDLLKQaiSPSALLIsdefslvlrsflwvdsllgaeidlmrpsra 97 79*************************888.89*****9875449****6347899********************99999 PP NAM 50 .......kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdW 121 + +ekew fF+++d+ky+tg r+nrat+sgyWkatg+dkev++ +g l g+kktLvf+ grap+g+kt W Zpz_sc01003.1.g00260.1.am.mk 98 cwwraqaR--RrwGEKEWCFFCRKDRKYPTGMRTNRATASGYWKATGRDKEVFRGSGVLAGMKKTLVFHLGRAPRGKKTAW 176 99966543..144889**************************************99************************* PP NAM 122 vmheyrle 129 vmheyrle Zpz_sc01003.1.g00260.1.am.mk 177 VMHEYRLE 184 ******85 PP | |||||||
2 | NAM | 157.2 | 6.9e-49 | 415 | 565 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........................kvkaeeke 57 +p+GfrFhPtdeelv++yL +kv + +++ vi++vd++k+ePw+Lp k+k +eke Zpz_sc01003.1.g00260.1.am.mk 415 MPAGFRFHPTDEELVSHYLIRKVLNCLFTC-LVIADVDLNKWEPWELPGnclelksisgmrpggravlvvgagKAKMGEKE 494 699************************999.78***************5599****************99998778899** PP NAM 58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 wyfF ++ +ky+tg r+nrat+sgyWkatg+dke+++ +g lvg+kktLvf+ grap+g+kt Wvmheyrle Zpz_sc01003.1.g00260.1.am.mk 495 WYFFWHKGRKYPTGMRTNRATASGYWKATGRDKEIFR-GGVLVGMKKTLVFHLGRAPRGKKTAWVMHEYRLE 565 *************************************.********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-12 | 15 | 57 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.739 | 18 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-25 | 19 | 183 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.14E-36 | 105 | 207 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-55 | 409 | 588 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.959 | 415 | 588 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-26 | 416 | 564 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 845 aa Download sequence Send to blast |
MSEVPANNSQ GEEQLLELPP GFRFHPTDEE LVIQYLARKA LNSRYTSPVI ADVDLLKQAI 60 SPSALLISDE FSLVLRSFLW VDSLLGAEID LMRPSRACWW RAQARRRWGE KEWCFFCRKD 120 RKYPTGMRTN RATASGYWKA TGRDKEVFRG SGVLAGMKKT LVFHLGRAPR GKKTAWVMHE 180 YRLEGELPPN LPAGAKDEWA VCRVFNKDLS AKPGLLQQTA STSSAPAAAG TMDSNDSLFF 240 LDDPTELMAM PPLVDPAPFP DDLVGLKGAT AGASSSGYRQ QVKTQEQPAA QNAPPLQLQE 300 DPYSYLAQPP PGEAGADGVR SLEDDLLWPD GVTEYSDMWK APSPARFLRP PPNPIPSPSP 360 FTLVPSSLSP SPPAGSAGAH RRSAEHLAAM SEVSAINSQG GEVEEEEEQQ QQLVMPAGFR 420 FHPTDEELVS HYLIRKVLNC LFTCLVIADV DLNKWEPWEL PGNCLELKSI SGMRPGGRAV 480 LVVGAGKAKM GEKEWYFFWH KGRKYPTGMR TNRATASGYW KATGRDKEIF RGGVLVGMKK 540 TLVFHLGRAP RGKKTAWVMH EYRLEGKLPP NLTPAAKDEW AVCRVFNKDL AAKPGQNPAS 600 SSAPPAAGTM ERPGSPFFLD DLLNPTELPP PLVDADPPFP DDLIDLQGGA TAGTSSSGYL 660 QQVKTEQPAA LQNTPPLQLQ EDPYHSYFGE AGAGSVRPLE DDLWPDGVTD YSNITPVRVG 720 CVWTMSPRRS RTQQRRASKP FAAVQQWMQR GGDDHLRGIK DWTGSYNVGL PSVHGFTCWA 780 RKCIWAVEDR RPKNAPLRAG LLQPTPVSRA VLAQPTRPPH SGWSPQRGVY PDPRLACRFA 840 ASLSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-44 | 16 | 593 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-44 | 16 | 593 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-44 | 16 | 593 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-44 | 16 | 593 | 7 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-44 | 16 | 593 | 10 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-44 | 16 | 593 | 10 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-44 | 16 | 593 | 10 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-44 | 16 | 593 | 10 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-44 | 16 | 593 | 10 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-44 | 16 | 593 | 10 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-44 | 16 | 593 | 10 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-44 | 16 | 593 | 10 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-44 | 16 | 593 | 7 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-44 | 16 | 593 | 7 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc01003.1.g00260.1.am.mk |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096183 | 2e-40 | FP096183.1 Phyllostachys edulis cDNA clone: bphyem213g04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002461233.1 | 2e-87 | NAC domain-containing protein 79 | ||||
TrEMBL | A0A0A9IAM4 | 2e-96 | A0A0A9IAM4_ARUDO; Uncharacterized protein | ||||
STRING | Sb02g043270.1 | 9e-87 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP70911 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 9e-68 | NAC domain containing protein 58 |