PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00999.1.g00170.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 470aa MW: 50239.1 Da PI: 5.0166

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00999.1.g00170.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.9	5.5e-11	320	365	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ L++l+P++ K +Ka+ L + ++Y+k Lq Zpz_sc00999.1.g00170.1.am.mkhc 320 HSIAERLRREKISDRMKDLQDLVPNS-----NKADKASRLDEIIDYVKFLQ 365 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-16	313	376	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.95E-12	313	369	No hit	No description
PROSITE profile	PS50888	16.437	315	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-15	317	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-8	320	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-11	321	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MENSSGSYLS SWPAPESYSS AAGSVESYAG EGNMPPSSYF MNAISDHSLK FNDQEQNSTL 60 LSNGCLAYSA QADLLSGEIL SKDKLTSNLM EVQQLQSRSN QQSNLVNQGV FQKNSTPEIF 120 YPQLDTPRFA ELPQTLSSSI DSNGIGVSAF LTGIHAVSSA STFCSTYENC SSFMEPVNIE 180 AYSFGAQNDV MLNKTDHPSG NTSAFGNSAS ATLIDGKDFI SGRLPSFATI HETNLPASGF 240 KAQKQEQNAI SDVPIPTAIG PMAVTAKQGT LIPPKMPSWT NDNKSEGPVS PPGVQPKANG 300 NGVGVKPRAR ARRGQATDPH SIAERLRREK ISDRMKDLQD LVPNSNKADK ASRLDEIIDY 360 VKFLQLQVKV LSMSRLGAPG AILPLLSESQ IEGYCGQPLS APTTPHGQPD AQDSEDTLAF 420 EQEVGKLMET SITSAMQYLQ NKGLCLMPVA LASSISNQKG TAAAAVPTQR

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MENSSGSYLS SWPAPESYSS AAGSVESYAG EGNMPPSSYF MNAISDHSLK FNDQEQNSTL  60
LSNGCLAYSA QADLLSGEIL SKDKLTSNLM EVQQLQSRSN QQSNLVNQGV FQKNSTPEIF  120
YPQLDTPRFA ELPQTLSSSI DSNGIGVSAF LTGIHAVSSA STFCSTYENC SSFMEPVNIE  180
AYSFGAQNDV MLNKTDHPSG NTSAFGNSAS ATLIDGKDFI SGRLPSFATI HETNLPASGF  240
KAQKQEQNAI SDVPIPTAIG PMAVTAKQGT LIPPKMPSWT NDNKSEGPVS PPGVQPKANG  300
NGVGVKPRAR ARRGQATDPH SIAERLRREK ISDRMKDLQD LVPNSNKADK ASRLDEIIDY  360
VKFLQLQVKV LSMSRLGAPG AILPLLSESQ IEGYCGQPLS APTTPHGQPD AQDSEDTLAF  420
EQEVGKLMET SITSAMQYLQ NKGLCLMPVA LASSISNQKG TAAAAVPTQR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00999.1.g00170.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002438003.1	0.0	transcription factor bHLH66 isoform X2
TrEMBL	A0A3L6DEA7	0.0	A0A3L6DEA7_MAIZE; Transcription factor bHLH82
STRING	Sb10g006250.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3254	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	2e-57	LJRHL1-like 3