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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Zpz_sc00954.1.g00130.1.sm.mkhc |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
C3H |
| Protein Properties |
Length: 272aa MW: 28431.6 Da PI: 9.7834 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc00954.1.g00130.1.sm.mkhc | genome | ZGD | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21.1 | 5.6e-07 | 6 | 30 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k ++C f+ t C++G++C+F H
Zpz_sc00954.1.g00130.1.sm.mkhc 6 KSKPCTKFFSTAGCPFGASCHFLHN 30
7789********************7 PP
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| 2 | zf-CCCH | 24.6 | 4.3e-08 | 72 | 97 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ + Ck G++C+FaHg+
Zpz_sc00954.1.g00130.1.sm.mkhc 72 KTRLCNKYNTAEGCKWGSKCHFAHGE 97
9***********************96 PP
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| 3 | zf-CCCH | 35.5 | 1.7e-11 | 238 | 263 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C +G+rC+FaHg+
Zpz_sc00954.1.g00130.1.sm.mkhc 238 FKTKLCENFNK-GSCTFGERCHFAHGE 263
69*********.*************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS51257 | 5 | 1 | 25 | No hit | No description |
| SMART | SM00356 | 0.3 | 4 | 31 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.915 | 4 | 32 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.1E-5 | 6 | 30 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.15E-6 | 6 | 32 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.5E-8 | 6 | 30 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.0E-14 | 67 | 102 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.32E-8 | 69 | 101 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.086 | 70 | 97 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.981 | 70 | 98 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.7E-5 | 72 | 97 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 2.19E-13 | 139 | 211 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 2.4E-9 | 141 | 211 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.194 | 142 | 206 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 3.0E-14 | 142 | 210 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 4.6E-10 | 144 | 207 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 5.5E-17 | 235 | 270 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.23E-9 | 237 | 268 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.4E-7 | 237 | 263 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17 | 237 | 264 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.5E-9 | 238 | 263 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MGVGSKSKPC TKFFSTAGCP FGASCHFLHN FPGGYQAVAK MTNLGGPPVP SPMGRMPMGP 60
GAPDGPPTPS LKTRLCNKYN TAEGCKWGSK CHFAHGEREL GKPMPMNNSM GGPPMGPGPN 120
GHFMPPPMPV PDMVPPSTFG ASATAKISVD ASLAGGIIGK GGINTKHISR VTGAKLAIRD 180
NEADPNLKNI ELEGTFDQIK HASAMVTELI VRIGGKAPQQ AKNNPGRGFH AGGPGSNFKT 240
KLCENFNKGS CTFGERCHFA HGEDELRKPP AS
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