PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00942.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 412aa MW: 42585.6 Da PI: 8.3112 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 91.2 | 9.6e-29 | 33 | 84 | 9 | 59 |
ZF-HD_dimer 9 ClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 C++NhAaslGghavDGCgEfmp +g++ +++++l+CaACgCHRnFHRr+ve Zpz_sc00942.1.g00010.1.am.mk 33 CRRNHAASLGGHAVDGCGEFMPLPGADaADPSSLNCAACGCHRNFHRRTVEG 84 ***************************99*******************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51523 | 23.06 | 30 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.9E-24 | 33 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-17 | 33 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.1E-26 | 33 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.12E-16 | 200 | 267 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 201 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.7E-22 | 209 | 265 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MDAMDVKQYK AVVFPNGGVA KKVKPAAVAP AVCRRNHAAS LGGHAVDGCG EFMPLPGADA 60 ADPSSLNCAA CGCHRNFHRR TVEGSAPPPS APAPPALPAP PQRREEATED RLPAVVDGAD 120 SDSDSDASEY DEERSVSPPP STQLHHVPVP VAQQPPPPPP SYPSAAPHML LSLSSGAPGT 180 AMAAAARLPA HQLTSPSSAL TPGGGAAPRK RFRTRFTAEQ KQRMQELSER LGWRLQKRDE 240 AIVDEWCRDI GVGKGVFKVW MHNNKHNFLG GHSARRSASA SAGAPTAAAA AALHNHTPTA 300 AGSAPPFHPS APSPPPPPVL TSSSPGATGF ININGAASSA PASYQEKING SSSPQSARVA 360 DAVEPSTGGT VRDGMGYEEE GAAFCRAGGA PNEIWAPLTL KRPARSAMAW PP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 4e-20 | 209 | 267 | 17 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00942.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001145929.2 | 1e-113 | uncharacterized protein LOC100279452 | ||||
Swissprot | Q6ER21 | 2e-79 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A0A9JHD4 | 1e-116 | A0A0A9JHD4_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G161315_P01 | 1e-112 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 3e-23 | homeobox protein 34 |