PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00934.1.g00050.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 312aa MW: 35375.4 Da PI: 6.1405

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00934.1.g00050.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.1	2.7e-19	23	109	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtse 74 W++ e+++Li+a++e++++lrrg+lk+++Weev++ + +++ +qC++k+e+l+kry+ + ++ Zpz_sc00934.1.g00050.1.am.mk 23 WSHVETMHLIDAYEERWTALRRGQLKAHQWEEVAAEVaarcavtpGVNVQHKTGTQCRHKLEKLRKRYRTEGARPVT---- 99 ***********************************999997754455589*************98877764.... PP trihelix 75 ssstcpyfdqle 86 s +pyf++++ Zpz_sc00934.1.g00050.1.am.mk 100 --SLWPYFRRMD 109 ..68*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.5E-20	21	111	No hit	No description
SMART	SM00595	2.3E-5	30	116	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MAQDADESPR RPALKKSAPA QPWSHVETMH LIDAYEERWT ALRRGQLKAH QWEEVAAEVA 60 ARCAVTPGVN VQHKTGTQCR HKLEKLRKRY RTEGARPVTS LWPYFRRMDR LERGPGATSS 120 ANPPAAESPP AGASDEEEVQ EEEEEEDEEE EEEELIPRNN NTRSINGIIR EFGSGLAPRH 180 PQLQQPPPSI TPSTAPPRKR VSYEAFQARA AAAEAEKVKE DEVEMARRPF RYGGANAELS 240 AVLRDFSEGF MRLERRRMEV QWEIEQGWKE TEARQTRMLQ DAQHGLRDTI AVVCAVPPKK 300 ARRDHGSNGD GF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00934.1.g00050.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820374.1	1e-149	uncharacterized protein LOC112896572
TrEMBL	A0A0A9FZH6	1e-150	A0A0A9FZH6_ARUDO; Uncharacterized protein
STRING	Pavir.J15698.1.p	1e-137	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10078	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-18	Trihelix family protein