PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00928.1.g00030.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 292aa    MW: 31433.3 Da    PI: 5.648
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00928.1.g00030.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.91.7e-27141199259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                    D ++WrKYGqK++kgs++pr+YY+C+s   C+++k ver+ e p+v+++tY geH h 
  Zpz_sc00928.1.g00030.1.am.mk 141 TDLWAWRKYGQKPIKGSPYPRGYYKCSSMrACMARKLVERNPEKPEVLIVTYIGEHCHA 199
                                   699***********************9988**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129135201IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-27136201IPR003657WRKY domain
SuperFamilySSF1182904.45E-24138201IPR003657WRKY domain
SMARTSM007741.8E-32140200IPR003657WRKY domain
PfamPF031064.1E-23142198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEPSNDWDLQ AVVRSCGAAA SSSSSSSGAA EPRSAVAPPR HKEAAGPIVD AGSESFLGRP  60
AATMRGLEYL NLDHVLPFSI TPTSGERAHG NEVLISFPAA STSGQSKKQA GRNAPRPKKS  120
KKSQLKKVVC EVPVADGGVS TDLWAWRKYG QKPIKGSPYP RGYYKCSSMR ACMARKLVER  180
NPEKPEVLIV TYIGEHCHAV PTMLNSLAGT TRHKPPSPDQ HSLQMSDEAC PMIVDGGAAE  240
TPDDESNLWP VDMSLLDEYP LDDFLAGPFD DDVGVSLEDQ DEQDGLGRRM SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-17122202280Disease resistance protein RRS1
5w3x_D4e-17122202280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00928.1.g00030.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1114164e-79AK111416.1 Oryza sativa Japonica Group cDNA clone:002-182-G03, full insert sequence.
GenBankAY8706014e-79AY870601.1 Oryza sativa (japonica cultivar-group) WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809273.11e-110WRKY transcription factor 22-like
TrEMBLA0A3L6SXR11e-115A0A3L6SXR1_PANMI; WRKY transcription factor 22-like
STRINGPavir.J36501.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-38WRKY family protein