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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00927.1.g00170.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 430aa MW: 48892.4 Da PI: 9.3458 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.2e-07 | 11 | 35 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC ++r G C+ d+C+FaHg+ Zpz_sc00927.1.g00170.1.sm.mkhc 11 YKTKLCAVWQR-GGCSN-DTCSFAHGK 35 9**********.*****.*******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-11 | 7 | 41 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.91E-5 | 9 | 39 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.972 | 10 | 36 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-4 | 11 | 35 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MRDPSRRGPA YKTKLCAVWQ RGGCSNDTCS FAHGKAELRQ YPGSGTSFPP RHGRRDYRGG 60 VFRNRFDRRR SPHRRYSPES DSRCHRSLHN RRPTSQERES SYSRSPSRKS ERRHEKKPDD 120 GEINSSRSMS VSDNNDDRSK DKFSSGNDKE DHEKQLKLIR DNTALLRDDK SHLEIILEEK 180 NAEVRKVLSR INDLDLQLKK EKEECHRMTS KVKKFIKAHG RFLKAQEELK RSQARFERLG 240 DLLASDILKR GANEEGSSID VDEDPSGYER NPNSAAPKKK SILYSTSEEA KAVKKRERDS 300 DTVLETEKYK SEGTVVELDK QNKGSETTKS LYLKKRLWAD KLGNVASLAS ADKVRDSPVK 360 HVLPSTGMAA HSMDDPIEAV ELEGRHEPMD AALENDADEE TRLPAMPPCS PPMVNAYKQS 420 EGGDLEVDVN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00927.1.g00170.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815366.1 | 0.0 | zinc finger CCCH domain-containing protein 13-like isoform X1 | ||||
Swissprot | Q6H7U2 | 0.0 | C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | A0A2T8KU07 | 0.0 | A0A2T8KU07_9POAL; Uncharacterized protein | ||||
STRING | Si017193m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3882 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 3e-31 | C3H family protein |
Publications ? help Back to Top | |||
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