PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 430aa MW: 48892.4 Da PI: 9.3458

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00927.1.g00170.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.2e-07	11	35	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC ++r G C+ d+C+FaHg+ Zpz_sc00927.1.g00170.1.sm.mkhc 11 YKTKLCAVWQR-GGCSN-DTCSFAHGK 35 9********.*.*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.3E-11	7	41	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.91E-5	9	39	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.972	10	36	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-4	11	35	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MRDPSRRGPA YKTKLCAVWQ RGGCSNDTCS FAHGKAELRQ YPGSGTSFPP RHGRRDYRGG 60 VFRNRFDRRR SPHRRYSPES DSRCHRSLHN RRPTSQERES SYSRSPSRKS ERRHEKKPDD 120 GEINSSRSMS VSDNNDDRSK DKFSSGNDKE DHEKQLKLIR DNTALLRDDK SHLEIILEEK 180 NAEVRKVLSR INDLDLQLKK EKEECHRMTS KVKKFIKAHG RFLKAQEELK RSQARFERLG 240 DLLASDILKR GANEEGSSID VDEDPSGYER NPNSAAPKKK SILYSTSEEA KAVKKRERDS 300 DTVLETEKYK SEGTVVELDK QNKGSETTKS LYLKKRLWAD KLGNVASLAS ADKVRDSPVK 360 HVLPSTGMAA HSMDDPIEAV ELEGRHEPMD AALENDADEE TRLPAMPPCS PPMVNAYKQS 420 EGGDLEVDVN

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MRDPSRRGPA YKTKLCAVWQ RGGCSNDTCS FAHGKAELRQ YPGSGTSFPP RHGRRDYRGG  60
VFRNRFDRRR SPHRRYSPES DSRCHRSLHN RRPTSQERES SYSRSPSRKS ERRHEKKPDD  120
GEINSSRSMS VSDNNDDRSK DKFSSGNDKE DHEKQLKLIR DNTALLRDDK SHLEIILEEK  180
NAEVRKVLSR INDLDLQLKK EKEECHRMTS KVKKFIKAHG RFLKAQEELK RSQARFERLG  240
DLLASDILKR GANEEGSSID VDEDPSGYER NPNSAAPKKK SILYSTSEEA KAVKKRERDS  300
DTVLETEKYK SEGTVVELDK QNKGSETTKS LYLKKRLWAD KLGNVASLAS ADKVRDSPVK  360
HVLPSTGMAA HSMDDPIEAV ELEGRHEPMD AALENDADEE TRLPAMPPCS PPMVNAYKQS  420
EGGDLEVDVN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00927.1.g00170.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815366.1	0.0	zinc finger CCCH domain-containing protein 13-like isoform X1
Swissprot	Q6H7U2	0.0	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	A0A2T8KU07	0.0	A0A2T8KU07_9POAL; Uncharacterized protein
STRING	Si017193m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	3e-31	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]