PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00906.1.g00140.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 301aa    MW: 32795.7 Da    PI: 10.2586
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00906.1.g00140.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.47.8e-1318104186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtse 74 
                                   +W++ e+ aL++   ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++ ++    
  Zpz_sc00906.1.g00140.1.sm.mk  18 CWSEGETAALVDSWGSRYLELNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGS---- 94 
                                   7*******************************************999999*********************999886.... PP

                      trihelix  75 ssstcpyfdqle 86 
                                     s ++++ ql+
  Zpz_sc00906.1.g00140.1.sm.mk  95 --SPWAFYGQLD 104
                                   ..4688888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-2316104No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDS WGSRYLELNR GSLRQPQWRE VADAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGSSPWAFY GQLDLLVGPT LSASGGAAGK  120
KTSPPRAVPM LRRRQSPSRS PSPPMALPLP NYGRGSNLPS AVLHNAAAAA AAAAAESDSY  180
DGYNNNNNDY DDDAASQQSP SRSVSSRSGG GAPPPAVGNK RKTSGSGGFG ELARAIETFA  240
EMYERMEAAK QRHAEEMERQ RIKFLKDLEL KRMQAFVDMQ LQLARAKHAR KGDASSEMLI  300
D
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00906.1.g00140.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458303.11e-139trihelix transcription factor ASIL2
TrEMBLA0A3L6FIV11e-145A0A3L6FIV1_MAIZE; Trihelix transcription factor ASIL2
STRINGSb03g030880.11e-138(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-30sequence-specific DNA binding transcription factors