PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00900.1.g00140.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 1030aa MW: 110860 Da PI: 8.8412

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00900.1.g00140.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	58.9	1.1e-18	490	588	3	114
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 + Ll+c + + d la a L +++ +s dgdp +R+a+yf ALa+rla ++ + s+ + +k+ Zpz_sc00900.1.g00140.1.am.mk 490 QSLLACSRTAA-ADPGLAAAELVKVRAAVSDDGDPAERVAFYFGDALARRLAC---------DGRAPP---STGLTLCYKT 557 77999998655.588899999999**************************8.........444444...5678899* PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHi 114 +++++P+ kf++ltaNqaIlea+ ++++Hi Zpz_sc00900.1.g00140.1.am.mk 558 LNDACPYSKFAQLTANQAILEATGAATKIHI 588 ******************************9 PP
2	GRAS	115.5	6.9e-36	633	776	224	374
GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304 ++vL+l ksl+P vv++ e e+++n+ F++rf++al yy ++f+sl++ +pr+s er+ + +g+ eg e Zpz_sc00900.1.g00140.1.am.mk 633 VQRVLRLAKSLNPSVVTLGEFEVSLNRVGFVDRFANALCYYISVFESLDVAMPRDSPERRIR--RAIGP-------DEGVE 704 578***************************************************988642..22444.......69* PP GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 r+ r+ ++W+ +e +GF+pv+ls++a++qa+lll +++ + y++ e++ +++ l W++rpL++vSaWr Zpz_sc00900.1.g00140.1.am.mk 705 RTDRMADSKEWQTLMEWCGFEPVRLSNYAMSQADLLLWNYDsKYKYSLIEQQPAFLsLAWEKRPLITVSAWR 776 ***************************************7777999999999999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	13.706	462	644	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-16	490	588	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-33	633	776	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 1030 aa Download sequence Send to blast
MLVDPCMLGD QGGLSRGHSY GWSGIQGAEM APASANVPRA CLSDCSLELW KDCRSKPHTA 60 EMRGAVPSRP SAPCLHARRL GGPAGSSEGN ARSHCWRLTE AAEAGSGSGR DPVIERRALG 120 LHQGAHLECA VWECAASARQ WHRGTLEGTL GMKWSRCSAW QCGPKARGWF GRSSVNVQGM 180 SWKLIAVLID ATPFHYFSVL GPSSDSGGMM FKLPFYRCGR RAPRVQGAGP GSSTQALYAR 240 HSLGYPNDYC PPEGSLVIAR RRRPSECATA FPPFGSTPQN HITEFLGRVP SPPFRDSAPG 300 DGGGGRMAYM CADSGNLMAI AQQVIQQQQQ QQHHQRHHQH HIPMPPPPPM PTPMPPRQVP 360 PVAGLPHGQT PAPSYGGGTW PHSEHFFADA FVGAPPSADA VFSDLPGAAD FDSDGWMESL 420 IADTPVFADF DLDRLIFTTP PPPVPVPAPA VEPVEAATAA LQAKAPSTAT PAASSSPSSL 480 DASCSAPILQ SLLACSRTAA ADPGLAAAEL VKVRAAVSDD GDPAERVAFY FGDALARRLA 540 CDGRAPPSTG LTLCYKTLND ACPYSKFAQL TANQAILEAT GAATKIHIAL ATRPEGKPSR 600 PAASLAATSS RLRDFAKLVG VDFEFVPLLH ETVQRVLRLA KSLNPSVVTL GEFEVSLNRV 660 GFVDRFANAL CYYISVFESL DVAMPRDSPE RRIRRAIGPD EGVERTDRMA DSKEWQTLME 720 WCGFEPVRLS NYAMSQADLL LWNYDSKYKY SLIEQQPAFL SLAWEKRPLI TVSAWRVGPK 780 ELDPEAGLIV ASAVFQYTNP HVDPTQAHRS PARSPRGDAH VLHPTRGSAD TAPRRLLAVA 840 AALPYVSPGA TRHRDGSRTT AGRHARTDER LEGPRAPRPL GTRRRACSFP HSFMYSHSLR 900 AAARSAGGGL GFALGRFRGG VSVVVAAPGF DIRRRRSVSA TSASSAPLPG EQGVGMEQPK 960 QQPPQVPRQD ASRGEEENNV KQHDAHGSTR AIQVRARSLA RSDLQYDTSQ GSQVKEKEKA 1020 RNLKDDKHAA

Sequence ? help Back to Top

Protein Sequence Length: 1030 aa Download sequence Send to blast

MLVDPCMLGD QGGLSRGHSY GWSGIQGAEM APASANVPRA CLSDCSLELW KDCRSKPHTA  60
EMRGAVPSRP SAPCLHARRL GGPAGSSEGN ARSHCWRLTE AAEAGSGSGR DPVIERRALG  120
LHQGAHLECA VWECAASARQ WHRGTLEGTL GMKWSRCSAW QCGPKARGWF GRSSVNVQGM  180
SWKLIAVLID ATPFHYFSVL GPSSDSGGMM FKLPFYRCGR RAPRVQGAGP GSSTQALYAR  240
HSLGYPNDYC PPEGSLVIAR RRRPSECATA FPPFGSTPQN HITEFLGRVP SPPFRDSAPG  300
DGGGGRMAYM CADSGNLMAI AQQVIQQQQQ QQHHQRHHQH HIPMPPPPPM PTPMPPRQVP  360
PVAGLPHGQT PAPSYGGGTW PHSEHFFADA FVGAPPSADA VFSDLPGAAD FDSDGWMESL  420
IADTPVFADF DLDRLIFTTP PPPVPVPAPA VEPVEAATAA LQAKAPSTAT PAASSSPSSL  480
DASCSAPILQ SLLACSRTAA ADPGLAAAEL VKVRAAVSDD GDPAERVAFY FGDALARRLA  540
CDGRAPPSTG LTLCYKTLND ACPYSKFAQL TANQAILEAT GAATKIHIAL ATRPEGKPSR  600
PAASLAATSS RLRDFAKLVG VDFEFVPLLH ETVQRVLRLA KSLNPSVVTL GEFEVSLNRV  660
GFVDRFANAL CYYISVFESL DVAMPRDSPE RRIRRAIGPD EGVERTDRMA DSKEWQTLME  720
WCGFEPVRLS NYAMSQADLL LWNYDSKYKY SLIEQQPAFL SLAWEKRPLI TVSAWRVGPK  780
ELDPEAGLIV ASAVFQYTNP HVDPTQAHRS PARSPRGDAH VLHPTRGSAD TAPRRLLAVA  840
AALPYVSPGA TRHRDGSRTT AGRHARTDER LEGPRAPRPL GTRRRACSFP HSFMYSHSLR  900
AAARSAGGGL GFALGRFRGG VSVVVAAPGF DIRRRRSVSA TSASSAPLPG EQGVGMEQPK  960
QQPPQVPRQD ASRGEEENNV KQHDAHGSTR AIQVRARSLA RSDLQYDTSQ GSQVKEKEKA  1020
RNLKDDKHAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-147	485	776	1	375	GRAS family transcription factor containing protein, expressed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00900.1.g00140.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727022	4e-57	KJ727022.1 Zea mays clone pUT4003 GRAS transcription factor (GRAS65) gene, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8569	37	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66770.1	6e-74	GRAS family protein