PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 366aa MW: 38977.5 Da PI: 6.6183

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00891.1.g00180.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	92	113	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++ ++ G Ck+Gd C FaHg Zpz_sc00891.1.g00180.1.sm.mk 92 AACPDLRK-GGCKRGDGCEFAHG 113 67999999.*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.12	88	114	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.338	89	115	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-4	92	113	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.9E-4	94	115	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	18	123	146	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MMMMGEGAAH APPWQQSLAS SGGGVDGDDA YVEEEDAVAA LDAYASDEFR MYEFKVRRCA 60 RGRSHDWTDC PFTHSGEKAR RRDPRRFHYS GAACPDLRKG GCKRGDGCEF AHGVFECWLH 120 PARYRTQPCN DGTACRRRVC FFAHTPDQLR VLPQQQQQSG ASPRGGSSPL AESYDGSPLR 180 RQAFESYLTK SMMSSSPTST LVSPPRSPPS ESPPVSPDAA ALRRGSWPAV GSPVNDVVAS 240 LRQLRLGGSP SGASLLAGAY PSGAYGSPKS TGLYSLPSTP TGSSPVTITT PSGATVVTID 300 RLNLGLLEEV EPVMERVESG RALREKVFER LSKEAAVPTD AAAAATAEGA APVTAPDVGW 360 VTDLVD

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MMMMGEGAAH APPWQQSLAS SGGGVDGDDA YVEEEDAVAA LDAYASDEFR MYEFKVRRCA  60
RGRSHDWTDC PFTHSGEKAR RRDPRRFHYS GAACPDLRKG GCKRGDGCEF AHGVFECWLH  120
PARYRTQPCN DGTACRRRVC FFAHTPDQLR VLPQQQQQSG ASPRGGSSPL AESYDGSPLR  180
RQAFESYLTK SMMSSSPTST LVSPPRSPPS ESPPVSPDAA ALRRGSWPAV GSPVNDVVAS  240
LRQLRLGGSP SGASLLAGAY PSGAYGSPKS TGLYSLPSTP TGSSPVTITT PSGATVVTID  300
RLNLGLLEEV EPVMERVESG RALREKVFER LSKEAAVPTD AAAAATAEGA APVTAPDVGW  360
VTDLVD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00891.1.g00180.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960911.1	0.0	zinc finger CCCH domain-containing protein 35
Swissprot	Q6L4N4	1e-162	C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBL	A0A0A9E0J0	0.0	A0A0A9E0J0_ARUDO; Uncharacterized protein
STRING	Si024826m	1e-177	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-75	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]