PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00890.1.g00220.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 212aa MW: 22846 Da PI: 8.1413

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00890.1.g00220.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.2	5.8e-38	17	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal...........peeeredamsslvyeAearar 70 +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l+ p ++r da+sslvyeA+ar+r Zpz_sc00890.1.g00220.1.sm.mk 17 PCASCKLLRRRCTQECVFAPYFPPEDPRKFAIVHKVFGASNVSKMLQVRpaasiivmhelPAQQRADAVSSLVYEANARMR 97 7*****************************************98743222333333339999************* PP DUF260 71 dPvyGavgvilklqqqleqlkaelallkee 100 dPvyG++g i+ lqqq++ql+ +lal+k+e Zpz_sc00890.1.g00220.1.sm.mk 98 DPVYGCAGAISYLQQQVSQLQMQLALAKAE 127 ************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.113	16	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-38	17	125	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MAGNGSSIGG SSSSSPPCAS CKLLRRRCTQ ECVFAPYFPP EDPRKFAIVH KVFGASNVSK 60 MLQVRPAASI IVMHELPAQQ RADAVSSLVY EANARMRDPV YGCAGAISYL QQQVSQLQMQ 120 LALAKAEILM HHNDGQLLGH SAAAPSSTKQ QQLQQQQMDA LQDYGSMFMQ NGLTDTLNTA 180 AAAAHQQQFL SSGFGSGGML HETCLKKESL WA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-45	17	148	11	130	LOB family transfactor Ramosa2.1
5ly0_B	1e-45	17	148	11	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00890.1.g00220.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100852	9e-61	FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661028.1	1e-78	LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-58	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A368S2P5	3e-77	A0A368S2P5_SETIT; Uncharacterized protein
STRING	Si026864m	1e-74	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	6e-49	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]