PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00889.1.g00220.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 219aa MW: 22956.1 Da PI: 7.6147 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.3 | 2.3e-31 | 123 | 181 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg+Hnh Zpz_sc00889.1.g00220.1.sm.mkhc 123 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDRDDPTYVVTTYEGTHNHV 181 59********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.6E-33 | 110 | 183 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-28 | 115 | 183 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.766 | 118 | 183 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-35 | 123 | 182 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-24 | 124 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MAAVGARPVL YHSAAGDEAS SMSSYFSRGG SSTSSSASSF SAALAPAPPP DPAAQFDISE 60 FFDDVAQGVF GGPPHAVDAT STAHVVPADS GAAAAGAGGQ SAANARSAAE RIAFRMRSEI 120 EVLDDGYKWR KYGKKSVKNS PNPRNYYRCS TEGCNVKKRV ERDRDDPTYV VTTYEGTHNH 180 VSPSTVYYAS QDAASGRFFV AGTQPPPAGR PFPSSASSW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-25 | 118 | 184 | 12 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-25 | 118 | 184 | 12 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00889.1.g00220.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837881 | 1e-129 | CT837881.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124O14, full insert sequence. | |||
GenBank | DQ298179 | 1e-129 | DQ298179.1 Oryza sativa WRKY transcription factor 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440147.1 | 8e-82 | probable WRKY transcription factor 50 | ||||
Swissprot | Q8VWQ5 | 3e-41 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | C5YUJ2 | 2e-80 | C5YUJ2_SORBI; Uncharacterized protein | ||||
STRING | Sb09g026830.1 | 3e-81 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-40 | WRKY DNA-binding protein 50 |
Publications ? help Back to Top | |||
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