PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00883.1.g00120.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 470aa    MW: 50413.7 Da    PI: 9.2452
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00883.1.g00120.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.63.9e-9211147029374
                          GRAS  29 elaspdgdpmqRlaayfteALaarlarsvse.lykal.ppsetsekn...sseelaalklfsevsPilkfshltaNqaIle 104
                                     asp++d+  Rla +f++ALa r+  + s+ ++  l p+s++s++     + +  a+ +f+++ P+l+f+hltaNqaIl+
  Zpz_sc00883.1.g00120.1.sm.mk 111 SAASPRADAADRLAYHFARALALRVDAKASGrVALGLlPSSSSSSSAaaaRTVSSGAYLAFNQIAPFLRFAHLTANQAILD 191
                                   569**********************99555414334424444444335444555556666********************* PP

                          GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl. 181
                                   aveg++r+Hi+D+d+ +G+QWp+Llqa+++R+   +gpp++RiTg g+    ++++l +tg+rL+ fA+++++pf f++l 
  Zpz_sc00883.1.g00120.1.sm.mk 192 AVEGARRIHILDLDAAHGVQWPPLLQAISERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLSTFARSIHLPFCFTPLl 268
                                   *******************************988888***********....9***************************9 PP

                          GRAS 182 ............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                               +++++++    +L+++p+E+laVn+v+ lh+l   +    +e  ++Lk vk +sP vv+++e+e   ++
  Zpz_sc00883.1.g00120.1.sm.mk 269 lscatsnqevagASTTTDSCVATTLELHPDETLAVNCVMFLHKLG-GP----DELAAFLKWVKAMSPAVVTMAEREPAGGG 344
                                   99999999887666678888899*********************8.33....33467*******************55533 PP

                          GRAS 251 e....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                                        ++ +r++ a+++ysa+f++lea++p+ s+er  vE+e+lgrei+ +++ +g++     + le+W ++ ++aGF+p 
  Zpz_sc00883.1.g00120.1.sm.mk 345 WdrvdELPRRVAVAMDHYSAVFEALEATVPPGSRERLLVEQEVLGREIEAALSYSGRR---WWRGLERWGAAARAAGFTPR 422
                                   224449**************************************************98...8899**************** PP

                          GRAS 328 plsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   pls +a++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+svS+W+
  Zpz_sc00883.1.g00120.1.sm.mk 423 PLSAFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLLSVSSWQ 470
                                   ***********************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.60747449IPR005202Transcription factor GRAS
PfamPF035141.3E-89111470IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MPATFLLIHP LMLLASHHHR RLRPPPPLLQ VKKRAWTAAA GKATAMLGSL HHSSSSSDTD  60
NDNKNGNTNT DNNNNSSGVL AAAPSARDLV LAXXXXXXXX XXXRAAGVLL SAASPRADAA  120
DRLAYHFARA LALRVDAKAS GRVALGLLPS SSSSSSAAAA RTVSSGAYLA FNQIAPFLRF  180
AHLTANQAIL DAVEGARRIH ILDLDAAHGV QWPPLLQAIS ERADPAAGPP EVRITGAGAD  240
RDTLLRTGSR LSTFARSIHL PFCFTPLLLS CATSNQEVAG ASTTTDSCVA TTLELHPDET  300
LAVNCVMFLH KLGGPDELAA FLKWVKAMSP AVVTMAEREP AGGGWDRVDE LPRRVAVAMD  360
HYSAVFEALE ATVPPGSRER LLVEQEVLGR EIEAALSYSG RRWWRGLERW GAAARAAGFT  420
PRPLSAFAVS QARLLLRLHY PSEGYLVQEA RGACFLGWQT RPLLSVSSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-4711346949378Protein SCARECROW
5b3h_A8e-4711346948377Protein SCARECROW
5b3h_D8e-4711346948377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00883.1.g00120.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810768.10.0protein MONOCULM 1-like
RefseqXP_025810769.10.0protein MONOCULM 1-like
SwissprotQ84MM91e-178MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A3L6PE740.0A0A3L6PE74_PANMI; Protein MONOCULM 1-like
STRINGSi008068m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-75GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]