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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00857.1.g00020.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 250aa MW: 26660.4 Da PI: 6.6967 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 172.8 | 3.7e-54 | 32 | 127 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdr++Pianv+rim++vlPa+akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvep Zpz_sc00857.1.g00020.1.sm.mk 32 REQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEP 112 89******************************************************************************* PP NF-YB 83 lkvylkkyrelegek 97 l+vyl++yre+ege Zpz_sc00857.1.g00020.1.sm.mk 113 LSVYLHRYREFEGEA 127 ************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.7E-49 | 25 | 135 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.33E-38 | 34 | 143 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.8E-25 | 38 | 101 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.1E-17 | 65 | 83 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 68 | 84 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.1E-17 | 84 | 102 | No hit | No description |
PRINTS | PR00615 | 7.1E-17 | 103 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MDSIFPAGAT ANGGNNGGGG GAQGQQAAPA IREQDRLMPI ANVIRIMRRV LPAHAKISDD 60 AKETIQECVS EYISFITGEA NERCQREQRK TITAEDVLWA MSRLGFDDYV EPLSVYLHRY 120 REFEGEARGV VGAARGGGGG VDHHHHHQMF NSRAPATAHH HDMQVHAAMY GGAAVPPHHG 180 FAAPPPHQGQ YMPMPYPYDT YGGEHAMAAY YGAGAYGPGN GGDGSGGSAS HTSQAGGTSS 240 LEHQHPFAYK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-61 | 30 | 122 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00857.1.g00020.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243257 | 1e-151 | AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953763.1 | 1e-95 | nuclear transcription factor Y subunit B-2 | ||||
TrEMBL | A0A2T7FBI6 | 5e-98 | A0A2T7FBI6_9POAL; Uncharacterized protein | ||||
STRING | Si020091m | 4e-95 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 1e-59 | nuclear factor Y, subunit B6 |