PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00818.1.g00100.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 1083aa    MW: 119393 Da    PI: 11.1529
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00818.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3986e-31360464199
                                   EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                   f+kv tpsdv+k++rlv+pk++ae++      g+ e++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++
  Zpz_sc00818.1.g00100.1.am.mk 360 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldaAGN-EKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDA 439
                                   89****************************8444.57789***************************************** PP

                                   T-EEEEEE-.SS.SEE..EEEEE-S CS
                            B3  77 gDfvvFkld.gr.sefelvvkvfrk 99 
                                   gD+v F +  g+  +++l++ ++r+
  Zpz_sc00818.1.g00100.1.am.mk 440 GDTVSFGRGvGEhARGRLFIDWRRR 464
                                   *******655888999999999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-39354468IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-28357465IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-24358445No hitNo description
PfamPF023628.4E-28360464IPR003340B3 DNA binding domain
PROSITE profilePS5086314.466360465IPR003340B3 DNA binding domain
SMARTSM010194.7E-21360465IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1083 aa     Download sequence    Send to blast
MESISYPEDA AAAGFCRKTP AVSIDGPRSM PARQRRRRLP LDCRSISRSW ASGWIGTQAD  60
SNRDTWIATN FFHVAAVGRG REEEAMRFPA HYGRRKLTAN FGQDEMRDIG EGQARSRAVR  120
GEEEDPGHPP PVRHGTTRLR DAGDRSEAAE LLRMRSLVTP CGSPRSDGAP PATRLYDRQY  180
SNKGDNIEID KGLWTKRITH IQVNAVHKGA AAAAAMAATD GSREVMQTAP SSLLPLATQL  240
ELVQWKERKA ARTGCSAALR FASPSYRPST FRRPGDTSKV RLLCILRPLL SGEGGRRAVK  300
AAAALHPGRE RGRREVGGVG AAYMPRPQLD HHLAMTTELT AGPIRSGACG IDAVEKEHMF  360
DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDA AGNEKGLLLS FEDRTGKPWR FRYSYWNSSQ  420
SYVMTKGWSR FVKEKRLDAG DTVSFGRGVG EHARGRLFID WRRRPDPPAP YYQYRIPIPA  480
SVPLAPWAPH GIGGARTVLH HLPPSPSTFY DSHHRRHDAY TPSGRLFYRP HQHQHQQATV  540
VLESVPVRIP TAPGHAEPPS VASSGSKRLR LFGVNLDCAA GSEEENGKSW RSAPPQLPSS  600
PRSSSSSSSG KASRRPERGS FQSTTRKFKR GGGGGRRLEE HLAICASQSG LAFQAAKLLG  660
DERRHVSFKC GRLGSKRRPN HGLSSSLSRG QAVMGGLQLI CRACQERART TDPSLWLAPI  720
PRVRPLGEDR PSSEWSPMNR RECDLWRWCS DGGQGSGSSI KTASADTSPG WDGHLDGKRT  780
DDLAALPACL GRSTGAAHRN DSNKRSTGKN SGQKGCTMET RERVWKKSRS AEKNGGVRDT  840
HGAFISGHDL IRDETTGTQD TDHTESGAPT GVPKRQPPWD VWTMGLGLLH RRRAGRRDQS  900
AVRPLFHEAC RMRAAGLDEF RWVDTVPRQV GQLVSLVTAS NLASVERANS AMKGTRHMAQ  960
AQLVSVETNR GRAWGAPATW VGDAVPALTA YCIIIQCPVA CFLVQGYLWR IGQMRRARGP  1020
TPNLSVREQG KQSKAHGGKT ERGRDRPRLQ AKHGAPRFGS RFERESRGQP RRQGKRPAFF  1080
PRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-583554653114B3 domain-containing transcription factor NGA1
5os9_B5e-583554653114B3 domain-containing transcription factor NGA1
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00818.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270011e-131KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4239433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.16e-65B3 family protein