PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00818.1.g00100.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 1083aa MW: 119393 Da PI: 11.1529 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 98 | 6e-31 | 360 | 464 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+kv tpsdv+k++rlv+pk++ae++ g+ e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++ Zpz_sc00818.1.g00100.1.am.mk 360 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldaAGN-EKGLLLSFEDRTGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDA 439 89****************************8444.57789***************************************** PP T-EEEEEE-.SS.SEE..EEEEE-S CS B3 77 gDfvvFkld.gr.sefelvvkvfrk 99 gD+v F + g+ +++l++ ++r+ Zpz_sc00818.1.g00100.1.am.mk 440 GDTVSFGRGvGEhARGRLFIDWRRR 464 *******655888999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-39 | 354 | 468 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.27E-28 | 357 | 465 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.27E-24 | 358 | 445 | No hit | No description |
Pfam | PF02362 | 8.4E-28 | 360 | 464 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.466 | 360 | 465 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.7E-21 | 360 | 465 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1083 aa Download sequence Send to blast |
MESISYPEDA AAAGFCRKTP AVSIDGPRSM PARQRRRRLP LDCRSISRSW ASGWIGTQAD 60 SNRDTWIATN FFHVAAVGRG REEEAMRFPA HYGRRKLTAN FGQDEMRDIG EGQARSRAVR 120 GEEEDPGHPP PVRHGTTRLR DAGDRSEAAE LLRMRSLVTP CGSPRSDGAP PATRLYDRQY 180 SNKGDNIEID KGLWTKRITH IQVNAVHKGA AAAAAMAATD GSREVMQTAP SSLLPLATQL 240 ELVQWKERKA ARTGCSAALR FASPSYRPST FRRPGDTSKV RLLCILRPLL SGEGGRRAVK 300 AAAALHPGRE RGRREVGGVG AAYMPRPQLD HHLAMTTELT AGPIRSGACG IDAVEKEHMF 360 DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDA AGNEKGLLLS FEDRTGKPWR FRYSYWNSSQ 420 SYVMTKGWSR FVKEKRLDAG DTVSFGRGVG EHARGRLFID WRRRPDPPAP YYQYRIPIPA 480 SVPLAPWAPH GIGGARTVLH HLPPSPSTFY DSHHRRHDAY TPSGRLFYRP HQHQHQQATV 540 VLESVPVRIP TAPGHAEPPS VASSGSKRLR LFGVNLDCAA GSEEENGKSW RSAPPQLPSS 600 PRSSSSSSSG KASRRPERGS FQSTTRKFKR GGGGGRRLEE HLAICASQSG LAFQAAKLLG 660 DERRHVSFKC GRLGSKRRPN HGLSSSLSRG QAVMGGLQLI CRACQERART TDPSLWLAPI 720 PRVRPLGEDR PSSEWSPMNR RECDLWRWCS DGGQGSGSSI KTASADTSPG WDGHLDGKRT 780 DDLAALPACL GRSTGAAHRN DSNKRSTGKN SGQKGCTMET RERVWKKSRS AEKNGGVRDT 840 HGAFISGHDL IRDETTGTQD TDHTESGAPT GVPKRQPPWD VWTMGLGLLH RRRAGRRDQS 900 AVRPLFHEAC RMRAAGLDEF RWVDTVPRQV GQLVSLVTAS NLASVERANS AMKGTRHMAQ 960 AQLVSVETNR GRAWGAPATW VGDAVPALTA YCIIIQCPVA CFLVQGYLWR IGQMRRARGP 1020 TPNLSVREQG KQSKAHGGKT ERGRDRPRLQ AKHGAPRFGS RFERESRGQP RRQGKRPAFF 1080 PRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-58 | 355 | 465 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-58 | 355 | 465 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00818.1.g00100.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727001 | 1e-131 | KJ727001.1 Zea mays clone pUT3977 ABI3VP1 transcription factor (ABI8) gene, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP42394 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 6e-65 | B3 family protein |