PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00798.1.g00140.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 262aa MW: 28342 Da PI: 9.0954

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00798.1.g00140.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.1	1.7e-09	62	83	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ Gd+C +aHg Zpz_sc00798.1.g00140.1.am.mk 62 PCPEFRKGGACRKGDNCEYAHG 83 8********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.19E-5	56	87	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.441	57	85	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-6	57	84	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.8E-7	62	83	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-5	62	85	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MSMCSGPRKP SNQPPPEAAT ATANDATASL LLELAAADDL AAFKRANARR RDPRRYSYSC 60 VPCPEFRKGG ACRKGDNCEY AHGVFECWLH PAQYRTRLCK DELRALSLKQ AGDMPAYSAV 120 PDTQLHIPTS PRVAANTAFG MDHSMAKAIM SSRASAFAKR SQSFIDRSGR APAARSLMSP 180 APTNSPSMLS DWGSPGGKLD WGVQGDELNK FRKSASFAFR GQSAAPVARP AEPDVSWVNS 240 LVRDGHAGDI LAQWPEQEQM VA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00798.1.g00140.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015692465.1	2e-89	PREDICTED: zinc finger CCCH domain-containing protein 33-like
Refseq	XP_025807185.1	7e-89	zinc finger CCCH domain-containing protein 33-like
Swissprot	Q688R3	4e-83	C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBL	A0A287EPU9	1e-105	A0A287EPU9_HORVV; Uncharacterized protein
STRING	Pavir.J10016.1.p	2e-89	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6013	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-24	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]