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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00793.1.g00300.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 480aa MW: 50452.5 Da PI: 9.7937 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.7e-05 | 240 | 262 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ Fs +++L+ H + H Zpz_sc00793.1.g00300.1.sm.mk 240 SCHRCGEQFSKWETLEAHHLSkH 262 7*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.746 | 239 | 267 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 241 | 262 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 4.99E-23 | 264 | 479 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 2.9E-12 | 288 | 451 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MGERRRRASA AAAGGGGVQA EEEKAAAPGK AAPPTVWFAL KKSLHCRSAP SDVHVPRPKA 60 APSAGGGHLS SIVTKRAAWS GCSRSIANLR DVIHGSKRHP GQPPSCSPRS IGSSEFLNPI 120 AHEVVLSTNS RCELKITGFG GLGAAGAAHD SDGDAGCVVS SFVGTLRPGT PGPAWAAGHA 180 GLQYSGSCRG SSVRCTPPRS PNVLLERNGS VALSSRRASC EETTTKSGGV NKKGSGGGMS 240 CHRCGEQFSK WETLEAHHLS KHAVTELMEG DSSRKIVEII CRTSLLKSES SCVRIERVFK 300 VHNTQRTLSR FEEYREAVKL KASKLPKKHP RCLADGNELL RFHGATISCG LGGGGSSPSL 360 CASDKCAVCR IIRHGFSSKK EASCKAGGVG VFTTSTSGRA FESIDAPADD DPAVTTRKAL 420 LVCRVIAGRV HKPLDNLKEF VGQTGFDSLA GKVGPYSNIE ELYLLNPRAL LPCFVVICKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00793.1.g00300.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071014 | 0.0 | AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence. | |||
GenBank | AK104311 | 0.0 | AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635096.1 | 0.0 | uncharacterized protein LOC4327046 | ||||
TrEMBL | Q8LQM0 | 0.0 | Q8LQM0_ORYSJ; Os01g0785900 protein | ||||
STRING | OS01T0785900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3277 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 1e-133 | C2H2 family protein |