PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00787.1.g00100.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 284aa    MW: 31307.6 Da    PI: 8.9119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00787.1.g00100.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006378101123
                                     EEETTTTEEESSHHHHHHHHHH.T CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                     +kC+ C+k  s+ s +  H    H
  Zpz_sc00787.1.g00100.1.am.mkhc  78 FKCHVCHKKLSTASGMAIHVLQvH 101
                                     89***************9987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080810.4249108IPR003656Zinc finger, BED-type
SMARTSM003552.85477IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.78E-554103No hitNo description
PROSITE patternPS0002805677IPR007087Zinc finger, C2H2
SMARTSM003550.178101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
PSERWAAVSS ISSGLALEFF LLPAPRSSSS RRGRGVQGKG RRAMGKKKKR VDKVFCYYCD  60
REFDDEKILV QHQKAKHFKC HVCHKKLSTA SGMAIHVLQV HKESVTNWFH PDLEHFRSWP  120
IASSAATNPM RVYDCPKRIE TSPPGSLERG AEGASGAEQG EWNCGRAAQG VGRRVPNAKP  180
GRESTEIEIY GMQGIPADVL AAHYGEEEDP SSKVAKVEVP QNVPSPMTSS PANVLQTSFP  240
MVPPGVPSPV ATQEERRLSL PKYQVHDETS QVSCVFTVCT IVWL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00787.1.g00100.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0379921e-78BT037992.1 Zea mays full-length cDNA clone ZM_BFb0206A01 mRNA, complete cds.
GenBankEU9629761e-78EU962976.1 Zea mays clone 247018 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0INM41e-60A0A0E0INM4_ORYNI; Uncharacterized protein
STRINGONIVA09G20740.12e-61(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7606322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.13e-32C2H2 family protein