PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00786.1.g00050.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 91aa    MW: 10427.7 Da    PI: 4.6917
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00786.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB431.1e-139553985
                         NF-YB 39 vsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                                    efi +++se+++ c re++kti+++ +l al++lGf +y++++ +
  Zpz_sc00786.1.g00050.1.sm.mk  9 FGEFINLLSSESNEVCSREEKKTIAPEHVLKALSDLGFREYIDEVYA 55
                                  579****************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.9E-8941IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.06E-15961IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.1E-18961IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MGGYETQVFG EFINLLSSES NEVCSREEKK TIAPEHVLKA LSDLGFREYI DEVYAAYEQH  60
KLETLVHINT STDPECLLDT TFGRYPKCCH H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-13117748114Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00786.1.g00050.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141894.11e-28uncharacterized LOC100274041
RefseqXP_004973302.11e-28protein Dr1 homolog
RefseqXP_008668142.11e-28uncharacterized protein LOC100274041 isoform X1
RefseqXP_008668144.11e-28uncharacterized protein LOC100274041 isoform X1
RefseqXP_008668147.11e-28uncharacterized protein LOC100274041 isoform X1
SwissprotP495922e-24NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A2S3I2421e-30A0A2S3I242_9POAL; Uncharacterized protein
STRINGPavir.Fa01512.1.p5e-31(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08190.14e-27nuclear factor Y, subunit B12
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]