PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00778.1.g00110.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 71aa    MW: 7633.71 Da    PI: 9.8049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00778.1.g00110.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.4e-122149331
                                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
                           HLH  3 rahnerErrRRdriNsafeeLrellPkas 31
                                  r+h+e+Er+RR+riN  +++Lr+l+P+as
  Zpz_sc00778.1.g00110.1.sm.mk 21 RSHSEAERKRRQRINAHLATLRTLVPSAS 49
                                  68*************************84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-91454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.8231867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.18E-82152No hitNo description
PfamPF000101.3E-92149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-92148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MATEGECSAP AAEERKVPPV RSHSEAERKR RQRINAHLAT LRTLVPSASR VRPAQVTTPA  60
CSVVDCMGAH G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00778.1.g00110.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126166e-41CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649548.14e-18transcription factor AIG1
TrEMBLA0A0E0AWM22e-17A0A0E0AWM2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0ESZ92e-17A0A0E0ESZ9_9ORYZ; Uncharacterized protein
TrEMBLI1QJH02e-17I1QJH0_ORYGL; Uncharacterized protein
STRINGOGLUM08G19000.14e-18(Oryza glumipatula)
STRINGOMERI09G10040.13e-18(Oryza meridionalis)
STRINGORGLA08G0157100.14e-18(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.18e-09bHLH family protein