PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 529aa MW: 57919.6 Da PI: 7.7394

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00735.1.g00230.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.5	1.7e-16	10	49	17	56
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +lF+++++p++++r eL+k+lgL+ rqVk+WFqNrR+++k Zpz_sc00735.1.g00230.1.sm.mkhc 10 RLFKECPHPDEKQRGELSKRLGLDPRQVKFWFQNRRTQMK 49 79***********************************999 PP
2	START	134	1.7e-42	153	271	94	206
EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE.....-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd.....seqkppe...sssvvRaellpSgiliepksnghsk 163 m+aelq+lsplvp R+++f+R+++ql +g w++vdvSvd +++ +++ v++++lpSg+++++++ng++k Zpz_sc00735.1.g00230.1.sm.mkhc 153 MKAELQVLSPLVPiREVTFLRFSKQLAEGAWAVVDVSVDgllrdQNS---AttsTAGNVKCRRLPSGCVMQDTPNGYCK 228 99**********************************844221233...24569******************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtwveh++++++++h+l+r+l++sgla+ga++w+atlqrqce+ Zpz_sc00735.1.g00230.1.sm.mkhc 229 VTWVEHTEYDEASVHQLYRPLLRSGLAFGARRWLATLQRQCEC 271 ***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	6.7E-9	5	55	IPR001356	Homeobox domain
PROSITE profile	PS50071	14.398	9	51	IPR001356	Homeobox domain
CDD	cd00086	8.26E-14	9	51	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.8E-15	10	58	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.71E-13	10	55	IPR009057	Homeodomain-like
Pfam	PF00046	6.5E-14	10	49	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	26	49	IPR017970	Homeobox, conserved site
SMART	SM00234	2.3E-14	45	271	IPR002913	START domain
SuperFamily	SSF55961	2.89E-20	151	271	No hit	No description
Pfam	PF01852	4.9E-37	153	271	IPR002913	START domain
PROSITE profile	PS50848	27.225	159	274	IPR002913	START domain
SuperFamily	SSF55961	1.24E-21	291	512	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MDSCPCCGRR LFKECPHPDE KQRGELSKRL GLDPRQVKFW FQNRRTQMKT QLERHENALL 60 KQENDKLRAE NMTIREAMRS PMCGGCGSPA MLGEVSLEEQ HLRIENARLK DELNRVYSLA 120 TKFLGKPLSF MSGYQIQPHL ALPMPSSSLE LAMKAELQVL SPLVPIREVT FLRFSKQLAE 180 GAWAVVDVSV DGLLRDQNSA TTSTAGNVKC RRLPSGCVMQ DTPNGYCKVT WVEHTEYDEA 240 SVHQLYRPLL RSGLAFGARR WLATLQRQCE CLAILMSPDT VSANDASVIT QEGKRSMLKL 300 ARRMTENFCA GVSASSAREW SKLDGAAGSI GEDVRVMARK SVNEPGEPPG VVLSAATSVW 360 VPVAPEKLFN FLRNEQLRAE WDILSNGGPM QEMANIAKGQ GPGNSVSLLR ASAMSANQSS 420 MLILQETCTD ASGSMVVYAP VDIPAMQLVM NGGDSTYVAL LPSGFAILPD APGIDSAEHK 480 TGGSLLTVAF QILVNSQPTA KLTVESVETV NNLISCTIKK IKNALQCDT

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MDSCPCCGRR LFKECPHPDE KQRGELSKRL GLDPRQVKFW FQNRRTQMKT QLERHENALL  60
KQENDKLRAE NMTIREAMRS PMCGGCGSPA MLGEVSLEEQ HLRIENARLK DELNRVYSLA  120
TKFLGKPLSF MSGYQIQPHL ALPMPSSSLE LAMKAELQVL SPLVPIREVT FLRFSKQLAE  180
GAWAVVDVSV DGLLRDQNSA TTSTAGNVKC RRLPSGCVMQ DTPNGYCKVT WVEHTEYDEA  240
SVHQLYRPLL RSGLAFGARR WLATLQRQCE CLAILMSPDT VSANDASVIT QEGKRSMLKL  300
ARRMTENFCA GVSASSAREW SKLDGAAGSI GEDVRVMARK SVNEPGEPPG VVLSAATSVW  360
VPVAPEKLFN FLRNEQLRAE WDILSNGGPM QEMANIAKGQ GPGNSVSLLR ASAMSANQSS  420
MLILQETCTD ASGSMVVYAP VDIPAMQLVM NGGDSTYVAL LPSGFAILPD APGIDSAEHK  480
TGGSLLTVAF QILVNSQPTA KLTVESVETV NNLISCTIKK IKNALQCDT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00735.1.g00230.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063249	0.0	BT063249.1 Zea mays full-length cDNA clone ZM_BFc0042P14 mRNA, complete cds.
GenBank	BT064453	0.0	BT064453.1 Zea mays full-length cDNA clone ZM_BFc0170E20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457484.1	0.0	homeobox-leucine zipper protein ROC5
Swissprot	Q6EPF0	0.0	ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBL	A0A3L6SNG9	0.0	A0A3L6SNG9_PANMI; Homeobox-leucine zipper protein ROC5-like isoform X2
STRING	OMERI02G26100.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	0.0	homeodomain GLABROUS 1

Publications ? help Back to Top
Zou LP, et al. Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice. Plant Physiol., 2011. 156(3): p. 1589-602 [PMID:21596949] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]