PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00727.1.g00050.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 283aa    MW: 31938 Da    PI: 6.6374
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00727.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.63.6e-51161411128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeelv +yL+++++g+  ++  +i+e+d+y+++Pw+Lp+++  +++ewyfF++rd+ky++g+r+nra+ +g
  Zpz_sc00727.1.g00050.1.sm.mk  16 LPPGFRFHPTDEELVLHYLCARAAGRGAPV-PIIAELDLYRFDPWELPARALFGRREWYFFTPRDRKYPNGSRPNRAAGTG 95 
                                   79*************************999.88***************87778999************************* PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatg dk+v + +g++vg+kk Lvfy+g+ p+g+kt+W+mheyrl
  Zpz_sc00727.1.g00050.1.sm.mk  96 YWKATGADKPVAH-RGRTVGVKKALVFYHGKPPRGVKTEWIMHEYRL 141
                                   *************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-6312168IPR003441NAC domain
PROSITE profilePS5100559.36916168IPR003441NAC domain
PfamPF023651.8E-2617141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAGPARRRDA EAELNLPPGF RFHPTDEELV LHYLCARAAG RGAPVPIIAE LDLYRFDPWE  60
LPARALFGRR EWYFFTPRDR KYPNGSRPNR AAGTGYWKAT GADKPVAHRG RTVGVKKALV  120
FYHGKPPRGV KTEWIMHEYR LADDAGRRKP GNGSLRLDDW VLCRLYNKKN EWEKLQQQRE  180
EERKELEMDA SHSQSFGDTR TPESGVDDVD VDQVPAFGDM GAVVPKKEVQ EIGDLGGADD  240
WLAGINLDDL QGLCPVPDDD FFSSLLVTPT AARAELGRHL LKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-9531742174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00727.1.g00050.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8098861e-171KR809886.1 Sorghum bicolor transcription factor 000584 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141629.21e-144uncharacterized protein LOC100273749
SwissprotQ7EZT11e-118NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLA0A0A9P3S71e-149A0A0A9P3S7_ARUDO; Uncharacterized protein
STRINGGRMZM2G079632_P011e-144(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.14e-82NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]