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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00713.1.g00190.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 558aa MW: 59816.2 Da PI: 5.1797 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.3e-30 | 310 | 369 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Zpz_sc00713.1.g00190.1.sm.mkhc 310 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 369 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-31 | 295 | 371 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-27 | 303 | 371 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.529 | 305 | 371 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 310 | 370 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-26 | 311 | 369 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MSSKKKRAAI DLSLEAEREE DDRSNGGDGD GRSKDGEMDK EEGQLKKHGE ALKLETKEEK 60 VVEVVVDQGG KGSKKEIKFR TQPGDAMEED KQLAEEGEGD DESDGAETRA EDKHVVEDAG 120 NRNAGDNHTA MEQDEVSAMQ EEMEKMKEEN RMLRRVVDRT VRDYYELQMK LAAYQQQQTD 180 EPKEPEVFLS LGAAAGVRAE PKLKRKEQAT PRRLSLSSDD TDDGKEDLGL SLSLGTYDED 240 KLEAGHDRDD ATAAGDGREK GYALLESSKL GRPPPPAGDL VAAGITSQSV NPANRKTRVS 300 VRVRCQGPTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAP GCPVRKQVQR CLEDMSILVT 360 TYEGTHNHPL PVGATAMAST TSAAATFMLL SSTSSSASIS DVGGATAAPP YLSPYLLNSA 420 SHHSAASSLL SPPPSIYGAS GLQHLNLFGH SSSSVLSQQA PHLGKYPWSS PSALGTSSGL 480 TTGGKRPFWS TGSGDEKTTT LPDNVGAVMS DPSKFSMAIA TAINNFMGKE GQTTGGKDGE 540 SSSKSNNKWG VVESLPPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 297 | 373 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00713.1.g00190.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452890.1 | 0.0 | probable WRKY transcription factor 9 | ||||
TrEMBL | C5XSY1 | 0.0 | C5XSY1_SORBI; Uncharacterized protein | ||||
STRING | Sb04g034440.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8022 | 34 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 7e-51 | WRKY DNA-binding protein 9 |