PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00713.1.g00110.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GeBP

Protein Properties

Length: 458aa MW: 49977.3 Da PI: 11.0596

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00713.1.g00110.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	43.3	1.1e-13	272	339	3	69
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkv 69 +q+ ws+ De +lL + +df+++tg p d+ +++e + +sis ++ + + K++rLK Kf++ Zpz_sc00713.1.g00110.1.am.mk 272 AQKHWSDADEFTLLNAALDFRKRTGRVPRLpDMAKLFESITDSISPEIDQWMVYYKLKRLKSKFQHTD 339 6899********************77766*******************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.3E-11	273	339	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MSAGAPRRRR RRRGRPPTRY NDGGAADLGL GFRLEQPRRP SLFFLPRVLF PREFSRPEFF 60 AWVSDPVGRQ DGGGSVGCPG FHNPASRVHA TKSQSARRCP SPRHAERTPQ PSPRHAAPMS 120 TERSAASAMD ADAEPSPPSP PRSKKPASRT GDGQSSPNPS PGGSPAGRSD QKRRRLRTSA 180 ESAALALASV AAHASAANVD ADANRAAAKR RGPAGVRVDE GHGAIQMLGA AAARVDKGQT 240 DVQKHGPAEG PVTRGRAAGH KPWTAYASRG AAQKHWSDAD EFTLLNAALD FRKRTGRVPR 300 LPDMAKLFES ITDSISPEID QWMVYYKLKR LKSKFQHTDG PSDRRLRDLC ADLWGVVPPN 360 DISDGETDSD ERRAAPDAAA MMPVVAEVLG EYWRMNARAM ERVPLEKGLS RLGKKQGRLM 420 ETKWRQQLDE EMQTQMRRHD LAKEVCSLLS GAIKGLGP

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MSAGAPRRRR RRRGRPPTRY NDGGAADLGL GFRLEQPRRP SLFFLPRVLF PREFSRPEFF  60
AWVSDPVGRQ DGGGSVGCPG FHNPASRVHA TKSQSARRCP SPRHAERTPQ PSPRHAAPMS  120
TERSAASAMD ADAEPSPPSP PRSKKPASRT GDGQSSPNPS PGGSPAGRSD QKRRRLRTSA  180
ESAALALASV AAHASAANVD ADANRAAAKR RGPAGVRVDE GHGAIQMLGA AAARVDKGQT  240
DVQKHGPAEG PVTRGRAAGH KPWTAYASRG AAQKHWSDAD EFTLLNAALD FRKRTGRVPR  300
LPDMAKLFES ITDSISPEID QWMVYYKLKR LKSKFQHTDG PSDRRLRDLC ADLWGVVPPN  360
DISDGETDSD ERRAAPDAAA MMPVVAEVLG EYWRMNARAM ERVPLEKGLS RLGKKQGRLM  420
ETKWRQQLDE EMQTQMRRHD LAKEVCSLLS GAIKGLGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	12	RRRRRRR
2	7	14	RRRRRRGR
3	171	175	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00713.1.g00110.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954046.2	1e-114	uncharacterized protein LOC101785158
TrEMBL	A0A0A8YJH9	1e-119	A0A0A8YJH9_ARUDO; Uncharacterized protein
STRING	Si017925m	1e-113	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2682	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00238.1	1e-06	DNA-binding storekeeper protein-related transcriptional regulator