PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zpz_sc00699.1.g00330.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 231aa MW: 24891.9 Da PI: 4.902

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00699.1.g00330.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	205	226	1	22
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C+ C+k+F++ L++H + Zpz_sc00699.1.g00330.1.sm.mkhc 205 HSCKSCSKTFNSAGALESHKKA 226 79*****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.77E-7	193	229	No hit	No description
PROSITE profile	PS50157	10.637	205	231	IPR007087	Zinc finger, C2H2
Pfam	PF12874	2.0E-4	206	229	No hit	No description
PROSITE pattern	PS00028	0	207	229	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEFWDEEMET EIPVKKNETE KIAAKVPAND GRKEKQDKES DDSETSSDTD DFSVSDSDDM 60 DEDVSSEDNN SRLSSGTDDS SDDSEDDSDD DSEDEETPVP EAGKKRAAGT ALKTPASDKK 120 AKISTPKKET GDKKVVHVAT PHPAKKASKT PADSKPKEKG PKTPADSKPK ENDPKTPADS 180 KLKEKAPKTP ADSKAKEKSP KSGSHSCKSC SKTFNSAGAL ESHKKAKKHE A

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00699.1.g00330.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682081.1	6e-27	histone deacetylase HDT2 isoform X1
TrEMBL	A0A0A9EU22	9e-38	A0A0A9EU22_ARUDO; Hda106
STRING	LPERR05G23920.1	1e-25	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2204	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	4e-06	histone deacetylase 2C