PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00699.1.g00330.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 231aa MW: 24891.9 Da PI: 4.902 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 205 | 226 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 ++C+ C+k+F++ L++H + Zpz_sc00699.1.g00330.1.sm.mkhc 205 HSCKSCSKTFNSAGALESHKKA 226 79*****************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.77E-7 | 193 | 229 | No hit | No description |
PROSITE profile | PS50157 | 10.637 | 205 | 231 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 2.0E-4 | 206 | 229 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 207 | 229 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEFWDEEMET EIPVKKNETE KIAAKVPAND GRKEKQDKES DDSETSSDTD DFSVSDSDDM 60 DEDVSSEDNN SRLSSGTDDS SDDSEDDSDD DSEDEETPVP EAGKKRAAGT ALKTPASDKK 120 AKISTPKKET GDKKVVHVAT PHPAKKASKT PADSKPKEKG PKTPADSKPK ENDPKTPADS 180 KLKEKAPKTP ADSKAKEKSP KSGSHSCKSC SKTFNSAGAL ESHKKAKKHE A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00699.1.g00330.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682081.1 | 6e-27 | histone deacetylase HDT2 isoform X1 | ||||
TrEMBL | A0A0A9EU22 | 9e-38 | A0A0A9EU22_ARUDO; Hda106 | ||||
STRING | LPERR05G23920.1 | 1e-25 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2204 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 4e-06 | histone deacetylase 2C |