PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00688.1.g00140.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 769aa    MW: 81975.6 Da    PI: 8.2075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00688.1.g00140.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06409430526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C+ f ++  C++Gd C +aHg
  Zpz_sc00688.1.g00140.1.am.mk 409 PCPEFKKGAGCRRGDMCEYAHG 430
                                   8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.48E-9240323IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.5E-9241328IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029711.851243314IPR020683Ankyrin repeat-containing domain
PfamPF000230.023245273IPR002110Ankyrin repeat
PROSITE profilePS500889.324279314IPR002110Ankyrin repeat
SMARTSM003569.8E-4404431IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4408432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258409432IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.371440464IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MRYEIAATAI VPLLSPGLAT RASGMSWGLP DSTPRASLFE PARAARALAL GHPMVSPVRE  60
GRVSSGRYGC GPEPPGYWLL LRARRPRPGL GQPARAVRES GGRSAPSCVS GPSPTCNSPG  120
SLYFLPFRFY PRWVPLTQEW TELARKLRPN QNLVLSKRQK PQPKVPFPSL PSGPLALSAI  180
SSNTFPDRAA PAMAETSDAA AVSARLLELA ADDDAVALGS LLASHPSLAD EPAPWYSPAR  240
GAEPMTPLMV AAAYGSVSCI DVLLSPPYLA DPNRASPSSL STALHLAAAG GAPSAPAAVS  300
RLLAAGADST LLDHLHRRPS DLVSLPHNSL PLKNHLLSLL GARKEWPPDP SLPDIKNGAY  360
ASDDFRMYSF KVRACSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFKKGAGCR  420
RGDMCEYAHG VFESWLHPAQ YRTRLCKDGV GCARRVCFFA HTAEELRPLY VSRDSSFTPP  480
LSPSGAGNGV TGGWPQPSLP ALCLPGSAGS LHLSRLRTSL SARSMTMDEM LATADYDGLG  540
SPASVRSARG TTLVPSNLDD LFSAEVASAA ASRSPRYADQ GGATFSPTRK AAMLNQFQQQ  600
QSLLSPRATA AGVNPEPVSP MSSRLLAALT QREKMQQQTF RSMSSRDLGS GASILVGSPV  660
GSSWSKWGIP SGSGTQDWGA DDEELGRLKR SSSFELQGGA NGDEPDLSWV STLVKEPTPE  720
KASNNGSVAM ESINILGQAA THDGINDEED TAGVIGSWLE QLQLDEMVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00688.1.g00140.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147048.20.0nucleic acid binding protein
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLC0HDR90.0C0HDR9_MAIZE; Zinc finger CCCH domain-containing protein 30
STRINGGRMZM2G027298_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-126CCCH-type zinc finger protein with ARM repeat domain