PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00676.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 613aa    MW: 65079.2 Da    PI: 7.185
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00676.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-342543452102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d++++++isw+e+g +fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  Zpz_sc00676.1.g00100.1.am.mk 254 FLTKTYQLVDDPAVDDVISWNEDGLTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFA 325
                                   9*****************************************************************99.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F++g+k+ll++i+r+k 
  Zpz_sc00676.1.g00100.1.am.mk 326 NDCFRRGEKRLLCDIHRRKV 345
                                   *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-37247338IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-58250343IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.1E-34251343IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.0E-31254343IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-20254277IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-20292304IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340293317IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-20305317IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MRDILAHGVR AAVSGHLPLG EVLDSTMDTM CGTLELRPSL HADLAWSLHP TLARVALAFG  60
VAVQRKNLIA PRTRYPMIDT CPVHPGPCPR VPEPSRRKQP RKKVTEPSRS SSAHHEANHT  120
EPNRTLPPIT AVHVPMELNP TPEDRAAGGY QCGRAHSARA VFVAVRFTHR IGNLRLPYLP  180
LPTRGGIPPH LEASPQIQPG GGGGRMAEQG AAAAEASASE PPPPXXXXAS EPPPPAPVPS  240
PAEAVGQRTL PTPFLTKTYQ LVDDPAVDDV ISWNEDGLTF VVWRPAEFAR DLLPKYFKHN  300
NFSSFVRQLN TYGFRKIVPD RWEFANDCFR RGEKRLLCDI HRRKVAPAQA APAAGLATAA  360
AAAASGAVTV AAAPIPMALP VTLPGSPGLS SDEQVLSSNS GSAEDHPHAP SGSGGGASGS  420
PSSDMGEENE RLRRENARLT RELGQMKKLC NNIVLLMSKY AASQQLDASA ALSSVVNNSG  480
ESSEALPQLP PLPPALLELM PSCPAALATA AAGLAAEPDA AARLFGVSIG LKRTREEDSG  540
DGEEPADHGR GSVEAKPEVS DAQQHPGSKE TTPSSPDQHR WPIYRPTPVY HSTRVCNGQD  600
PGPGSDQDGS SSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A1e-2425434310110Heat shock factor protein 1
5hdn_A1e-2425434310110Heat shock factor protein 1
5hdn_B1e-2425434310110Heat shock factor protein 1
5hdn_C1e-2425434310110Heat shock factor protein 1
5hdn_D1e-2425434310110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00676.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957414.11e-180heat stress transcription factor B-2c isoform X2
SwissprotQ652B01e-143HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A368Q4221e-179A0A368Q422_SETIT; Uncharacterized protein
TrEMBLK3ZU131e-179K3ZU13_SETIT; Uncharacterized protein
STRINGSi030094m1e-180(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-57HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]