PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00671.1.g00230.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 471aa    MW: 50423.2 Da    PI: 11.0452
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00671.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.76.9e-071992164057
                                   -HHHHHHHHHHHHHHHHC CS
                      Homeobox  40 terqVkvWFqNrRakekk 57 
                                    +++V++WFqNr+a+ k+
  Zpz_sc00671.1.g00230.1.am.mk 199 GDANVFYWFQNRKARSKN 216
                                   589************995 PP
2Wus_type_Homeobox40.56.8e-141942174164
             Wus_type_Homeobox  41 eyGkiedkNVfyWFQNrkaRerqk 64 
                                   eyG ++d+NVfyWFQNrkaR+++k
  Zpz_sc00671.1.g00230.1.am.mk 194 EYGPVGDANVFYWFQNRKARSKNK 217
                                   7*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000462.4E-4199215IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSVIIGEREL QFHSFRQMGD QRKANRSPPP EVAITSPRPG KAPSEQGRKR RGVGHFGFPR  60
LPRLASSLTF VAPIEHPRPS GRKPSTRSRL GETQRGHPTH PIRDRGNGRF RPVNRETIHC  120
AAPRGQEEIS SVQASERASA RRHGILQQQA LAEHVQVQAR RPAVAVAAGH ERLAALPRLR  180
SVLHYHRKLH QALEYGPVGD ANVFYWFQNR KARSKNKLRT GAARRAAPAR APAPAPPQIL  240
NQQVQLLASP VQQAPTSSSS SSSDRSSGSS RPAAKPAPQA MSATEAMDLL GPLAAACPQV  300
YYQGQPPPAP SPKMLDHVAT DETILFPWPQ GYCLSAAELA AILGGGAQYT HVPVQQQPQA  360
LPAVPSDRFQ RLAVDGVIAG GAPAAAAVPA TGPHEGGGVA VLCIGDSATG RSVVREVAAN  420
RHLDVRALFG EAAVLFRYVG DGERPVHVPV DAASGCTVEP LQHGVVYWVL V
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00671.1.g00230.1.am.mk
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969472.11e-41WUSCHEL-related homeobox 7
TrEMBLA0A3L6QYW71e-61A0A3L6QYW7_PANMI; WUSCHEL-related homeobox 7 isoform X5
STRINGSi004249m2e-41(Setaria italica)
STRINGGRMZM2G031882_P027e-41(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-09homeobox-3