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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00671.1.g00080.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 233aa MW: 24531.8 Da PI: 6.5271 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 36.1 | 1.3e-11 | 201 | 221 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 +Dgy+WrKYGqK vk+s++pr Zpz_sc00671.1.g00080.1.sm.mk 201 EDGYRWRKYGQKAVKNSPYPR 221 8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-12 | 185 | 222 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.06E-9 | 192 | 222 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.092 | 195 | 221 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-5 | 200 | 233 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-7 | 201 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSSSGEFYFH DELASLFAQQ QQRPAPAGDM MQQQASTWFA DFLQAGTPTA ADYDDLLLCR 60 ALDLPVSAAA DDVVKRELVV DTGGGGARTP SGGGTAPVTP NTTSSMSSSS SEAARGAGGG 120 GRGLGGGGGF GAGEEDSPAG RCKKEEGDGE EIKSGKGDQE DGDKSKKGAG SAAKAKGNKG 180 EKRQRQPRFA FMTKSEVEHL EDGYRWRKYG QKAVKNSPYP RYAHTHVFST YTF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 127 | GGRGLGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00671.1.g00080.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458273.1 | 6e-71 | probable WRKY transcription factor 48 | ||||
TrEMBL | C5XFY7 | 1e-69 | C5XFY7_SORBI; Uncharacterized protein | ||||
STRING | Sb03g030480.1 | 2e-70 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 2e-19 | WRKY DNA-binding protein 28 |