PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00671.1.g00070.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 174aa MW: 18452.1 Da PI: 9.978 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 57 | 3.9e-18 | 2 | 40 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+ Zpz_sc00671.1.g00070.1.sm.mk 2 CRSYYRCTTQRCPVKKRVERSYQDPAVVITTYEGKHTHP 40 69************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.923 | 1 | 42 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-14 | 2 | 42 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-16 | 2 | 42 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-12 | 2 | 40 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-9 | 3 | 41 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MCRSYYRCTT QRCPVKKRVE RSYQDPAVVI TTYEGKHTHP IPATLRGSTH LLAAHGLHHH 60 LGALAPPPMP HAMGAAAPTF GRAGGGGIDV LGLLQPRGGT SSHHAMLPTT MSQTSLTRGP 120 VSSSVTMSAT TTTPSSSPPS LQMQHFMAQD FGLLQDMMMP SSFVHTNGGG NIQP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00671.1.g00070.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003222 | 5e-71 | AP003222.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0003E08. | |||
GenBank | AP014957 | 5e-71 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 5e-71 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969457.1 | 3e-54 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A0A9RQQ5 | 6e-59 | A0A0A9RQQ5_ARUDO; Uncharacterized protein | ||||
STRING | Si001816m | 1e-53 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 6e-24 | WRKY DNA-binding protein 71 |