![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00663.1.g00260.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 264aa MW: 29436.2 Da PI: 8.9257 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.4 | 2.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtf+kRrng+lKKA+ELS+LCdae+a+iifs +g+lyeys+ Zpz_sc00663.1.g00260.1.sm.mk 9 KRIENTTSRQVTFCKRRNGLLKKAYELSILCDAEIALIIFSGRGRLYEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 104.7 | 1.2e-34 | 83 | 174 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 + + +++ qqe++kL+++i++Lq+++ hl+G+++++++ keL++Le++Le+++ +iRskK++ll+++ie++qk+e +lq+ Zpz_sc00663.1.g00260.1.sm.mk 83 IDVNSHQYFQQEATKLRQQIQTLQNSNMHLMGDSIGNMTAKELKNLESRLERGIGRIRSKKHDLLFAEIEYMQKREADLQN 163 566889*************************************************************************** PP K-box 90 enkaLrkklee 100 en +Lr+k++e Zpz_sc00663.1.g00260.1.sm.mk 164 ENLYLRAKIAE 174 ********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.151 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-31 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.75E-45 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.8E-27 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.305 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 264 aa Download sequence Send to blast |
MGRGKIEIKR IENTTSRQVT FCKRRNGLLK KAYELSILCD AEIALIIFSG RGRLYEYSNN 60 SIRSTIERYK KASASTSGSA PVIDVNSHQY FQQEATKLRQ QIQTLQNSNM HLMGDSIGNM 120 TAKELKNLES RLERGIGRIR SKKHDLLFAE IEYMQKREAD LQNENLYLRA KIAEADRAQQ 180 QAAAEEQEMV PVTTELQALP ASFDPRGYYQ QQVSMLTAAA SASSSQYAEH PEGGQEHQQT 240 ALHLGYHLNV DAAAAAAAAG KGLI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-19 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-19 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-19 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-19 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
5f28_A | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 1e-19 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-19 | 1 | 73 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 1e-19 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-19 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-19 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-19 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-19 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-19 | 1 | 73 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00663.1.g00260.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970830.1 | 1e-143 | MADS-box transcription factor 21 | ||||
Swissprot | Q8RU31 | 1e-131 | MAD21_ORYSJ; MADS-box transcription factor 21 | ||||
TrEMBL | A0A3L6SJC7 | 1e-143 | A0A3L6SJC7_PANMI; MADS-box transcription factor 21 | ||||
STRING | Si002551m | 1e-143 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18960.1 | 6e-89 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|