PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00661.1.g00140.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 819aa MW: 88749.7 Da PI: 10.3342

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00661.1.g00140.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.7	2.2e-37	542	597	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Zpz_sc00661.1.g00140.1.am.mk 542 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 597 58***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-37	524	596	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-31	542	596	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	542	596	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	544	580	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MIILLLLHSE LAGLSRSLLS LWIPVPVHQH GDTYVTMVGI DYYAQQIPES RRFISRRPRT 60 KSQRIACPCL SAPTDPSVQV LHVSDQSVRG RSTWQRVAVT SHDASPRAVR TTRKRTCRHA 120 AFRRGHVPGA GRSSIHGPIG GSAPALNRVL VRYDWTAQLA AGHAGFTASR RSIGRSDGGL 180 DSLPPGASKS NLLLMPPCCP SKKYRPTYPL SPSTDDLPRQ LPENLLRVAD GAVLSASHGP 240 RWRSPVRTVR ADGLDAAGTG RSALRSGVVT SRALASCALV VPIRSLGSTG TELQRLVMSR 300 HELFKYSYVL YSKPLHVSVV VLSRLAMSGY CTRLAQLAGW STRHTAPGAI PGDIRRPVGL 360 AATARRTPRG ASLITRIHDR SSSCVAGASP SYPSKKSEAR TTDGRPPRES KNKWPWAIPR 420 DLRPSHPTGP WDLGLHAPVQ WGAATYVRRA RTIQPRRDAR RACVRAYARV RAFSAVSRPS 480 VTWPRGLRRT DHVHRRPPAL SNHAREDKEM LSSHPEAMMP YAPRPPSLLV DRRYKQGAEV 540 APNCPRCDSP NTKFCYYNNY SLSQPRYFCK GCRRYWTKGG SLRNVPVGGG CRKNRRGKSS 600 VRSAAESIAG GRDAAFGNRF PGPVRPDLVL EGMVGNAVNP GQATPDVQSS GDGSRIDLAM 660 LYAKFLNHPP ADAGATPESA GQMDEVFDTF SASTSDLSPA GVLGPGAQLD PCHDGFGEWS 720 GPVSSNDPTS TSSTTTTTTM LCTDVSVQAA LGELNFAMDQ SCFDALGLPA DVGNLSSWCS 780 IVPSLSTLDV ALSFHEGMIN GPDHDWSVDC QELEALYMP

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MIILLLLHSE LAGLSRSLLS LWIPVPVHQH GDTYVTMVGI DYYAQQIPES RRFISRRPRT  60
KSQRIACPCL SAPTDPSVQV LHVSDQSVRG RSTWQRVAVT SHDASPRAVR TTRKRTCRHA  120
AFRRGHVPGA GRSSIHGPIG GSAPALNRVL VRYDWTAQLA AGHAGFTASR RSIGRSDGGL  180
DSLPPGASKS NLLLMPPCCP SKKYRPTYPL SPSTDDLPRQ LPENLLRVAD GAVLSASHGP  240
RWRSPVRTVR ADGLDAAGTG RSALRSGVVT SRALASCALV VPIRSLGSTG TELQRLVMSR  300
HELFKYSYVL YSKPLHVSVV VLSRLAMSGY CTRLAQLAGW STRHTAPGAI PGDIRRPVGL  360
AATARRTPRG ASLITRIHDR SSSCVAGASP SYPSKKSEAR TTDGRPPRES KNKWPWAIPR  420
DLRPSHPTGP WDLGLHAPVQ WGAATYVRRA RTIQPRRDAR RACVRAYARV RAFSAVSRPS  480
VTWPRGLRRT DHVHRRPPAL SNHAREDKEM LSSHPEAMMP YAPRPPSLLV DRRYKQGAEV  540
APNCPRCDSP NTKFCYYNNY SLSQPRYFCK GCRRYWTKGG SLRNVPVGGG CRKNRRGKSS  600
VRSAAESIAG GRDAAFGNRF PGPVRPDLVL EGMVGNAVNP GQATPDVQSS GDGSRIDLAM  660
LYAKFLNHPP ADAGATPESA GQMDEVFDTF SASTSDLSPA GVLGPGAQLD PCHDGFGEWS  720
GPVSSNDPTS TSSTTTTTTM LCTDVSVQAA LGELNFAMDQ SCFDALGLPA DVGNLSSWCS  780
IVPSLSTLDV ALSFHEGMIN GPDHDWSVDC QELEALYMP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00661.1.g00140.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-37	Dof family protein