PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00658.1.g00070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 582aa    MW: 63591 Da    PI: 11.3025
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00658.1.g00070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox413.2e-13306371256
                                   T--SS--HHHHHHHHHHHHHSSS--H...........HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsa...........eereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ +++k+q  +Lee F+++++++            ++++ LAk+l+L+ rqV vWFqNrRa+ k
  Zpz_sc00658.1.g00070.1.am.mk 306 RKKLRLSKDQAAVLEESFKEHNTLNPvrtihsfdsiiKQKAALAKQLNLKPRQVEVWFQNRRARTK 371
                                   788899*************9888874333333333447999***********************98 PP
2HD-ZIP_I/II109.32.7e-35306406191
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep...........erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkray 70 
                                   +kk+rlsk+q+++LEesF+e+++L+p           ++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++
  Zpz_sc00658.1.g00070.1.am.mk 306 RKKLRLSKDQAAVLEESFKEHNTLNPvrtihsfdsiiKQKAALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCF 386
                                   69***********************96666666666678****************************************** PP

                   HD-ZIP_I/II  71 dalkeenerLekeveeLreel 91 
                                   ++l+een+rL++ev+eLr +l
  Zpz_sc00658.1.g00070.1.am.mk 387 ESLTEENRRLQREVAELR-AL 406
                                   *****************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.7E-22141275IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.07E-13295374IPR009057Homeodomain-like
PROSITE profilePS5007114.155302373IPR001356Homeobox domain
SMARTSM003891.2E-10304377IPR001356Homeobox domain
CDDcd000863.77E-13306374No hitNo description
Gene3DG3DSA:1.10.10.602.9E-15306376IPR009057Homeodomain-like
PfamPF000461.4E-10306371IPR001356Homeobox domain
PROSITE patternPS000270348371IPR017970Homeobox, conserved site
SMARTSM003406.9E-23373416IPR003106Leucine zipper, homeobox-associated
PfamPF021831.2E-10373407IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MMTTMGAARR RHRSWRSKSY RYHKPPYPCR VPLPSPTPSR VHQSSSVRQE PRRSGARVRQ  60
NWRSSKHRHH GVMIPGGRAA VGGTSQTAKR YLDDEAGGHA TAKLTQLVDV LRSSRYSTPP  120
PPFLLIACHT PRGEEQYHNL GLGLSLSLGI ATAAAPVEPP PQQPQHQQKS ALSVAPVPAQ  180
QPRQCCNGFS AGFFFSPSTG IDRSLFERKP QQQQAAPTPA AACHGHEMPF LRGIDVNRAP  240
AGEISRRGSC SEDEEPGASS PNSTLSRLSG KRGAPARSGG GEGDRTPRAG GGGSDDEDSG  300
AGGGSRKKLR LSKDQAAVLE ESFKEHNTLN PVRTIHSFDS IIKQKAALAK QLNLKPRQVE  360
VWFQNRRART KLKQTEVDCE FLKRCFESLT EENRRLQREV AELRALKLVA PHHYGRTPPP  420
TTLTMCPACE RVAGSSADGG SPWGPAPARP VFVDGPARRE GGRMAPSEMG RQAGRQPKVI  480
SSGSKQRQPN QVIIARHPMC CLPVNNALRA HAYPVSRLAV CPNHSPVPGT DRIRRWHGAL  540
ARKCVVASGD SRRPRPRHLR ALCWTFSAPR ASRMSDYGGR SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304310SRKKLRL
2365373RRARTKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00658.1.g00070.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9424521e-105EU942452.1 Zea mays clone 1503625 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012697997.11e-138homeobox-leucine zipper protein HOX1 isoform X1
TrEMBLA0A3L6THC51e-137A0A3L6THC5_PANMI; Homeobox-leucine zipper protein HOX1 isoform X2
STRINGPavir.Ia02217.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.12e-66Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein