PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MIKC_MADS

Protein Properties

Length: 212aa MW: 24082.1 Da PI: 6.8086

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00652.1.g00110.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.4	3.4e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ fsstg+lyeyss Zpz_sc00652.1.g00110.1.am.mkhc 10 RIDNTTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMTFSSTGRLYEYSS 59 8***********************************************96 PP
2	K-box	91.2	1.9e-30	76	158	4	86
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 ++ ++ +++ + +q+e+a L+++++nLq+++R+l+GedL+ L+ keLq+Le+qLe+sl+ +RskK++l++++i+el + Zpz_sc00652.1.g00110.1.am.mkhc 76 QQVAANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNAKELQSLENQLETSLRGVRSKKDQLMFDEIHELNQ 154 4445588999********************************************************************9 PP K-box 83 keke 86 k e Zpz_sc00652.1.g00110.1.am.mkhc 155 KIYE 158 9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.006	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.00E-44	2	77	No hit	No description
SuperFamily	SSF55455	7.98E-32	2	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.1E-27	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	6.6E-26	83	156	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.699	86	195	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008134	Molecular Function	transcription factor binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MGRGKIVIRR IDNTTSRQVT FSKRRNGIFK KAKELAILCD AEVGLMTFSS TGRLYEYSST 60 SMKSLIDRYG KAKEEQQVAA NPNSELKFWQ REAASLRQQL HNLQENHRQL MGEDLSGLNA 120 KELQSLENQL ETSLRGVRSK KDQLMFDEIH ELNQKIYETE GPSGVNRESP TPYNFAVVEK 180 TNIPVQLELN TLPQENDDEP STAPTLGLQL NP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-19	1	83	1	83	MEF2C
5f28_B	4e-19	1	83	1	83	MEF2C
5f28_C	4e-19	1	83	1	83	MEF2C
5f28_D	4e-19	1	83	1	83	MEF2C
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00652.1.g00110.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF112149	1e-160	AF112149.1 Zea mays MADS box protein 2 (mads2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004952891.1	1e-134	MADS-box transcription factor 27
Swissprot	Q6EP49	1e-133	MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBL	A0A368PPS0	1e-133	A0A368PPS0_SETIT; Uncharacterized protein
STRING	BRADI3G46920.1	1e-133	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP614	35	130

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-80	AGAMOUS-like 21

Publications ? help Back to Top
Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876]