PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00650.1.g00080.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 127aa MW: 13651.3 Da PI: 4.7456

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00650.1.g00080.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42.7	1.6e-13	9	67	42	100
DUF260 42 vlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 v +++lp eer +a+++++ eA +r+rdPvyG++g+i +lqq+++ ++ ela++++e Zpz_sc00650.1.g00080.1.am.mk 9 VRARMQSLPVEERARAADTMAAEALWRVRDPVYGSAGIIDRLQQEIRAVQRELATTRAE 67 677899************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.561	1	68	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-11	8	65	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MSAPFDSAVR ARMQSLPVEE RARAADTMAA EALWRVRDPV YGSAGIIDRL QQEIRAVQRE 60 LATTRAELAM RAGTVAARTA GAQRAPATTP QPPAVEVRDG GHPLAVQHGE EEAPVLDPDA 120 FLNLDDL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00650.1.g00080.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002444738.2	5e-26	LOB domain-containing protein 24
TrEMBL	A0A3L6RJR8	9e-28	A0A3L6RJR8_PANMI; LOB domain-containing protein 24-like
STRING	Pavir.Cb01140.1.p	4e-29	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62