PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00637.1.g00040.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 487aa MW: 51567.2 Da PI: 6.1862

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00637.1.g00040.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.9	2.7e-13	53	89	3	40
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i ++ +r t+s+R++g KKAeELS+LC+++va++ Zpz_sc00637.1.g00040.1.am.mk 53 IASQKKRAATLSRRLEGFKKKAEELSILCGVRVAIV-C 89 8899******************************76.3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	15.18	43	88	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.1E-9	43	102	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.27E-15	43	116	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.03E-19	45	104	No hit	No description
Pfam	PF00319	3.7E-12	53	89	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MSSAASLLYI RSRHPPRRPA RACGGTFRFA SVESSRRARA GTMPRRKIPM ELIASQKKRA 60 ATLSRRLEGF KKKAEELSIL CGVRVAIVCG TDGAAPPVVW ESEEGVLNAY RALPDAARAA 120 HTFRAYADAE LGKEAAKLAR VRQGGPAALS CWDKALEGLD AEEARRVLED VDAAIAAAED 180 RRVALGLPAL LDDSGGLFDG VAPLSHAVLT FGGGNFVDVE ESALGAQGLG GGDANGGRYE 240 QAVWTNDVRA AAMQPSYGFH QYPAGGGGAN MDGYQLQMAA GMNGYQRQMA ADLNGYQRQM 300 AADLNGYQLQ MAADLNGYSD NNDTRIISWD GIQPCSGGLP HLGYASQCYG GMSGYRTQHV 360 SSTGGRQPNL YNAVVPAGYP SFDIGHGYID TPVGNNAQSY AGNFVNAPPA LSHTMGTGDN 420 FSNAAPAQSP AVYHGGELIN GSSYTTQQPA AQQQIQSATS SQQSLSGIEQ LHYFSDVDDA 480 QLQFWGN

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MSSAASLLYI RSRHPPRRPA RACGGTFRFA SVESSRRARA GTMPRRKIPM ELIASQKKRA  60
ATLSRRLEGF KKKAEELSIL CGVRVAIVCG TDGAAPPVVW ESEEGVLNAY RALPDAARAA  120
HTFRAYADAE LGKEAAKLAR VRQGGPAALS CWDKALEGLD AEEARRVLED VDAAIAAAED  180
RRVALGLPAL LDDSGGLFDG VAPLSHAVLT FGGGNFVDVE ESALGAQGLG GGDANGGRYE  240
QAVWTNDVRA AAMQPSYGFH QYPAGGGGAN MDGYQLQMAA GMNGYQRQMA ADLNGYQRQM  300
AADLNGYQLQ MAADLNGYSD NNDTRIISWD GIQPCSGGLP HLGYASQCYG GMSGYRTQHV  360
SSTGGRQPNL YNAVVPAGYP SFDIGHGYID TPVGNNAQSY AGNFVNAPPA LSHTMGTGDN  420
FSNAAPAQSP AVYHGGELIN GSSYTTQQPA AQQQIQSATS SQQSLSGIEQ LHYFSDVDDA  480
QLQFWGN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00637.1.g00040.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4572	29	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.3	2e-08	M-type_MADS family protein