PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00623.1.g00240.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 481aa    MW: 51966.6 Da    PI: 8.8586
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00623.1.g00240.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.7e-27276337159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC+++k+v+r++edp+++++ Y g+H+++
  Zpz_sc00623.1.g00240.1.am.mk 276 VDDGHSWRKYGQKEILGAKYPRAYYRCTHRhsqGCEATKQVQRTDEDPELFDVFYLGTHTCR 337
                                   59***************************98999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.482271334IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-26272337IPR003657WRKY domain
SuperFamilySSF1182902.75E-24274338IPR003657WRKY domain
SMARTSM007742.4E-38276338IPR003657WRKY domain
PfamPF031063.9E-26277337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAAAYLLIVL SQDARRASRS ITRKTTKSIR GLVPGRTKMP TQRMHKRAKR RTAGRRFTDR  60
ASVAGLACPP SSRHVTTRRP QVPWASSSSS PCHRVSGSAP RGGRPGACEC TTSAATCRSC  120
MNPYVPSSWS RGASEIEDQT ELDQLAPPFL VSKQVRSMES LDSSCGSRLP VVTELSNIKE  180
LAKQLEEQLG GSRDLCKHLA SQIFSLTERS IGIITSSDFG GARKRSAADA GLGAATLGSL  240
GQLADAPFKT TKKRKIMEKT KSQVRVSSAG GCETPVDDGH SWRKYGQKEI LGAKYPRAYY  300
RCTHRHSQGC EATKQVQRTD EDPELFDVFY LGTHTCRFHN TAADEAAAAT PPPEHRPDAR  360
SLLHNLAVKN REGLAVAGEP QGWDATTPFG MPSTPASLCL APERSPFSAP SVSDNYGVSP  420
APPELHHAPS FPTFDAAEWR AQSELHEVVS ALVVAGTPPV PGCMDVTDEL LDDIDVSFFL  480
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-22276337869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00623.1.g00240.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-110probable WRKY transcription factor 30
TrEMBLA0A1E5WLZ71e-110A0A1E5WLZ7_9POAL; Putative WRKY transcription factor 53
STRINGPavir.Ba02545.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-34WRKY DNA-binding protein 46