PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00623.1.g00220.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 322aa    MW: 34422.3 Da    PI: 6.3166
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00623.1.g00220.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY863.4e-27126186158
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                   +dDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+r++edp++++++Y g+H++
  Zpz_sc00623.1.g00220.1.am.mk 126 VDDGHSWRKYGQKDILGAKHPRGYYRCTHRhtqGCAATKQVQRTDEDPELFDVIYLGTHTC 186
                                   59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.689121184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-27122187IPR003657WRKY domain
SuperFamilySSF1182904.58E-25123186IPR003657WRKY domain
SMARTSM007741.2E-38126188IPR003657WRKY domain
PfamPF031061.4E-26127186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDGGVYCSGG SRLVVMELSH IKELLTQLEV HLADSPDLCK RLASQIFSLT ERSIGIITSS  60
SSGFDGGRKR SAEDAGLGSA TPSPLSDVVV DAPFNNNKKR KMMEKRKHQV RVSPAGGGGG  120
GETTPVDDGH SWRKYGQKDI LGAKHPRGYY RCTHRHTQGC AATKQVQRTD EDPELFDVIY  180
LGTHTCVHKP AAGQVAQATQ PPEHNPDAHS LLQNLSASLT VKTEGLAVAG EPQGWSASTP  240
FRFSSTPLAP ERRSLVSVPS TSENWGVSPA TSDSNHVASF HPFDGAAGEA ELQEVVAASA  300
LSAPFLDIDE DFLNIDISSY FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-23126186868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00623.1.g00220.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-123probable WRKY transcription factor 30
TrEMBLA0A1E5WLZ71e-125A0A1E5WLZ7_9POAL; Putative WRKY transcription factor 53
STRINGPavir.Ba02545.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-32WRKY family protein