PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00623.1.g00160.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 496aa    MW: 53168.6 Da    PI: 6.8601
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00623.1.g00160.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.96.5e-26120181159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +dDg +WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp+++++ Y g H+++
  Zpz_sc00623.1.g00160.1.am.mk 120 VDDGRSWRKYGQKEILGAKYPRAYYRCTHRhtqGCAATKQVQRTDEDPELFDVFYVGAHTCR 181
                                   58***************************98999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.345115183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-26117181IPR003657WRKY domain
SuperFamilySSF1182901.29E-23118182IPR003657WRKY domain
SMARTSM007742.2E-36120182IPR003657WRKY domain
PfamPF031067.8E-25121181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MESIDSSGGS RLLAVTELSH IKELAKQLEE QLGGSRDLCK HLASQIFSLT ERSIGIITCC  60
SDFGGARKRS ATDAGLAAAT PGSLGQLADA PFKTTKKRKM MEKMKSQVRV SSGGGCETPV  120
DDGRSWRKYG QKEILGAKYP RAYYRCTHRH TQGCAATKQV QRTDEDPELF DVFYVGAHTC  180
RVHNTVADEA ASATPPPDQH NPDAHSLQHN LTVKTEEGLA VAGEPQGWEW DATAPFGMSA  240
TPASLCLAAE SCPFSAPSTS DNRGVLSPAS SELNHAPSFP TFDAGEWRAQ SELQGVVSAL  300
VVAGTPPAPD CMDGTDELLD DFDVSFFLAA RARAQRSTIR RWETGFPTRE VPIAIAPAGR  360
PSVRDADSSG SPHLTAGRVC GRRGSASPPG RKIPRPCFPT PRRYGGVELT ASARENPRFG  420
RACGGDHPPG PDVTLPDLPH VTLKLDRDRL GTITYVANLA VPPTQLDLDR LGIAHEPRTY  480
VQAPEPEETK ALPASC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22120181869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00623.1.g00160.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954064e-37FP095406.1 Phyllostachys edulis cDNA clone: bphylf046n10, full insert sequence.
GenBankFP0974354e-37FP097435.1 Phyllostachys edulis cDNA clone: bphylf045f19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-112probable WRKY transcription factor 30
TrEMBLA0A2S3GYW51e-111A0A2S3GYW5_9POAL; Uncharacterized protein
STRINGPavir.Ba02545.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-29WRKY DNA-binding protein 30