PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00621.1.g00210.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 507aa MW: 54450.8 Da PI: 10.2456

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00621.1.g00210.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.4	1.4e-37	320	376	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ ++ Zpz_sc00621.1.g00210.1.am.mk 320 GDPCPRCESRETKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGGTRKSSSA 376 578**************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-23	320	370	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.612	321	375	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	322	374	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	323	359	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MQKPISGEST TPPCSGGGGG VAHVTCSPPP RDPTPAARAS ARWPPFLRHT AVPHWSLVAS 60 NRPPRLLGDH RQQSMALNQS ILFNQWPVLV TLRRAAVSRR VADVTAPPSE ERTAQFHHVQ 120 WSGWRRAVDG LHPQTQHYST DVWDRSWGLD QWVTVVDPWC TRTRTAPPGT GHIFLGSSHA 180 NRSIAGGRCA AVKCALTRAP GAQLTGSPVS HRLTVHPLTR RPDGKSESRA NQPDLLQQRG 240 AGVHKLERDR RDHERSSAQL CDTNASPASA LCSLAPPAAP RMQEPTRRPA PPFAGVDLRR 300 PKGYPEPATV KVEEAPATAG DPCPRCESRE TKFCYYNNYN TSQPRHFCKS CRRYWTKGGS 360 LRNVPVGGGT RKSSSASPAS PKNPKRSKNS KRRRVAPSPD PVPSTDDAVA SNAGVGNREP 420 TPAPLTEDAA AGNVEDRAHV APPAAEQGFK STSVARGLGV TDAGGGGGKE PPDTGPFEWP 480 SSCGDLGSFW GAGVFTDTDQ ALFLNLP

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MQKPISGEST TPPCSGGGGG VAHVTCSPPP RDPTPAARAS ARWPPFLRHT AVPHWSLVAS  60
NRPPRLLGDH RQQSMALNQS ILFNQWPVLV TLRRAAVSRR VADVTAPPSE ERTAQFHHVQ  120
WSGWRRAVDG LHPQTQHYST DVWDRSWGLD QWVTVVDPWC TRTRTAPPGT GHIFLGSSHA  180
NRSIAGGRCA AVKCALTRAP GAQLTGSPVS HRLTVHPLTR RPDGKSESRA NQPDLLQQRG  240
AGVHKLERDR RDHERSSAQL CDTNASPASA LCSLAPPAAP RMQEPTRRPA PPFAGVDLRR  300
PKGYPEPATV KVEEAPATAG DPCPRCESRE TKFCYYNNYN TSQPRHFCKS CRRYWTKGGS  360
LRNVPVGGGT RKSSSASPAS PKNPKRSKNS KRRRVAPSPD PVPSTDDAVA SNAGVGNREP  420
TPAPLTEDAA AGNVEDRAHV APPAAEQGFK STSVARGLGV TDAGGGGGKE PPDTGPFEWP  480
SSCGDLGSFW GAGVFTDTDQ ALFLNLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	390	394	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00621.1.g00210.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354149	7e-73	AK354149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005F20.
GenBank	AK360934	7e-73	AK360934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128K17.
GenBank	AK377058	7e-73	AK377058.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3146P05.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-26	DOF zinc finger protein 1