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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00615.1.g00260.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bZIP | ||||||||
Protein Properties | Length: 200aa MW: 22089.7 Da PI: 9.7271 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.1 | 2.6e-10 | 40 | 96 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +++ eLe+kv++L++e ++L +l l+ l + Zpz_sc00615.1.g00260.1.sm.mkhc 40 KRAKRILANRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTTGLSA 96 9*******************************************9999877666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.2E-14 | 36 | 100 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.955 | 38 | 101 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.7E-9 | 40 | 94 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.0E-11 | 40 | 94 | No hit | No description |
SuperFamily | SSF57959 | 2.81E-11 | 40 | 92 | No hit | No description |
CDD | cd14703 | 7.04E-21 | 41 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MDGVSSPLEG ESALSSGLPD YAKKAMPADR IAELALIDPK RAKRILANRQ SAARSKERKI 60 KYTSELERKV QTLQTEATTL SAQLTLLQRD TTGLSAENRE LKLRLQSMEE QAKLRDALNE 120 ALREEVQRLK IAAGQAANMN GNPFNGGLQQ QIPSYFSQQQ QMSYQGGHQS QHRNPSHHQG 180 PSNGGQSLGG QFLNDSMDFI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00615.1.g00260.1.sm.mkhc |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441871.1 | 1e-120 | transcription factor VIP1 | ||||
Swissprot | Q6S4P4 | 9e-56 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A0D3HRQ7 | 1e-119 | A0A0D3HRQ7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | C5YS97 | 1e-119 | C5YS97_SORBI; Uncharacterized protein | ||||
STRING | Sb08g003940.1 | 1e-120 | (Sorghum bicolor) | ||||
STRING | OBART12G03760.1 | 1e-120 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1925 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43700.1 | 2e-42 | VIRE2-interacting protein 1 |
Publications ? help Back to Top | |||
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